Hymenobacter oligotrophus: D3Y59_17340
Help
Entry
D3Y59_17340 CDS
T05656
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hyh
Hymenobacter oligotrophus
Pathway
hyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3Y59_17340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyh03021
]
D3Y59_17340
03019 Messenger RNA biogenesis [BR:
hyh03019
]
D3Y59_17340
Transcription machinery [BR:
hyh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D3Y59_17340
Messenger RNA biogenesis [BR:
hyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D3Y59_17340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_25
NACHT
ATPase_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYA38657
UniProt:
A0A3B7RW36
LinkDB
All DBs
Position
4029877..4032000
Genome browser
AA seq
707 aa
AA seq
DB search
MYTIDELKDRLLSELKEIAESLNVGNFRRLSKQDLIYKILDQQAITPPDKMPTKRAPLAE
TIDAAPALNGNAAPAGRPERRGGRTAAPAPAPLAAEVPALEAAVAVADAPAVAVPEVQAN
GRPPRGAQRGGRGRRNDAPAVSLAPDEDANTTAAPLPPVEAPAPDAPVIAQPVPEIPQPA
EAPAPRPAEEQPREQRPVRFVVPQPGREPREIRPADYRRDAPRPNRNEPREPRPVQQGAP
EQAPQAPRPLGEQPRPLNGQAPQQQQLPRDEREVREPREPREMREGREPRDRDQRREERF
NREGRQPQQQGPRQAGEPGQQPQQQRQPQLPRVESLDITIPSEGALEMMPDGGYGFLRSP
YYNYLASPDDIYVSPQQVKQYSLKAGDTVKCTVRPPKEGEKYYALVTVESVNGRSVEDVR
DRISFSHLTPLFAEERLKLSTSPSQYSTRILDLFAPIGKGQRGLIVAQPKVGKTVLLQEI
ANSIAENHPEVYLMILLIDERPEEVTEMQRTVKAEVLSSTFDETADRHVKIAGMALDKAK
RLVECGHDVVILLDSITRLARAYNTVQPSSSRILSGGIDAGALQKPKRFFGAARNVENGG
SLTIIATALTDTGSKMDEVIFEEFKGTGNMELQLDRKLANKRIFPAIDVPASGTRREDLL
MGKEELSRVWVLRKFMSDMTSTEAMEFLKDRMKGTRDNMEFLVSMNG
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtacactattgacgagctcaaggaccgcttgttgtccgagctgaaggaaatagccgaa
tcccttaacgtgggcaatttccgccgcctgagcaagcaggaccttatctacaagattctg
gatcagcaagctattacgccgcccgataaaatgcctaccaaacgggctccgctggccgaa
accattgatgccgcccctgcgctgaatggcaacgcagccccagccggccgccccgagcgc
cgtggtggccgcactgcggcaccggcacctgcgccgttggccgccgaagttcccgcactc
gaagcagctgtggcagtagccgacgcacccgccgttgcggtgccggaggtacaagccaac
gggcgcccgccgcgcggcgcacagcgcggtggccgcggccgtcgcaacgacgccccggcc
gtttcccttgcccccgacgaagacgccaacacaactgccgcaccgctgccgcccgtggag
gccccggcccccgacgcgcccgttattgcgcaacccgtacccgaaattccgcagcccgcc
gaagcacctgcgccgcgcccggccgaggagcagccccgcgagcaacgccccgtgcgtttt
gtggtgccgcaacccggccgcgagccgcgcgaaattcgcccggccgattaccgccgcgac
gcgccgcgtcccaaccgcaacgagccccgcgagccgcgccccgtgcagcagggtgccccc
gagcaagcgccccaggcgccgcgccccctaggtgagcagccgcgtccgctcaacgggcag
gcaccgcaacagcagcagctaccccgcgatgaacgcgaagtgcgcgagccgcgggaaccc
cgcgaaatgcgcgaaggccgcgaaccccgcgaccgtgaccagcgccgcgaagaacgcttt
aaccgcgaaggccgccaaccgcagcagcaagggccgcgccaggccggcgagccaggccag
cagccgcaacagcagcggcagccgcaattgccgcgcgtcgagtcgttggatatcaccatc
ccgagcgaaggtgccctggagatgatgcccgacggcggctacggcttcctccgctcgccc
tactacaactacttagcctcgcccgacgacatttacgtgtccccgcagcaggtaaagcag
tactcgctcaaggccggcgacaccgtgaagtgcaccgtgcgcccgcccaaagaaggcgag
aagtattacgctctggtaacggtagagagcgtaaacggccgctcggtagaagacgtgcgc
gaccggatttccttctcgcaccttacgccgttgtttgccgaagagcgcctgaagctgagc
acctcgccctcgcagtacagcacgcgtattctggatttgtttgcccccattggtaaaggc
cagcgcggcctgattgtggcgcagccgaaagtaggcaagacggtgctgctgcaagaaatt
gccaactccatcgccgaaaaccaccccgaggtgtacctgatgattttgctcatcgacgaa
cgccccgaggaggtaaccgaaatgcagcgcacggtgaaagccgaagtgctcagctcgacc
ttcgacgaaaccgccgaccgccacgtgaaaatcgccggcatggccctcgacaaagccaag
cgcctggtggagtgcggccacgatgtggtaattctgctcgactcgattacccgcctcgcc
cgcgcctacaacacggtgcagccctcgtcgagccgcatcctgtcgggtggtatcgatgct
ggcgcactccagaagcccaagcgcttcttcggtgccgcccgcaacgttgagaatggcggt
tcgctcaccatcattgccacagccctgacggacaccggctcgaagatggatgaagtaatc
ttcgaagaattcaagggcaccggcaacatggagttgcagctcgaccgcaagctggccaac
aagcgcatcttcccggccatcgacgtgccggcatccggcacccgccgcgaagacctgctg
atgggcaaggaagagctcagccgcgtgtgggtactgcgcaagttcatgtccgacatgacc
tccaccgaggccatggagttcctgaaagaccgcatgaaaggcacccgcgacaacatggaa
ttcctggtatcgatgaacggctaa
DBGET
integrated database retrieval system
