Hydrogenibacillus sp. N12: K2M58_03030
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Entry
K2M58_03030 CDS
T07426
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
hyi
Hydrogenibacillus sp. N12
Pathway
hyi03030
DNA replication
hyi03430
Mismatch repair
hyi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K2M58_03030
03430 Mismatch repair
K2M58_03030
03440 Homologous recombination
K2M58_03030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyi03032
]
K2M58_03030
03400 DNA repair and recombination proteins [BR:
hyi03400
]
K2M58_03030
Enzymes [BR:
hyi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K2M58_03030
DNA replication proteins [BR:
hyi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K2M58_03030
DNA repair and recombination proteins [BR:
hyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K2M58_03030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
Rv2179c-like
HHH_3
RNase_H_2
T2SSK
DNA_pol3_a_NI
DNA_pol_A_exo1
DNA_ligase_ZBD
Auto_anti-p27
DUF6282
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
QZA33532
LinkDB
All DBs
Position
639599..643942
Genome browser
AA seq
1447 aa
AA seq
DB search
MKGVIDPALGGLMARVPPEDKLSEALQAARLERLVVYPDARRWVVQITAPALLPAAPLIA
WEAALGAAFRDVADVELWVRIEPPPPFQAVARGYGDALLGYLAARHPLLAAAVVDVAFEA
AGDGRAVLYVEPAALPAFQNGALKTLRRFFAQYVGRTPEVVVLPAPDDAARAAARRERLA
AAEEAAIASVAERTSPSDGEGRPPAGPRQNGNGAAEAAAEGTEAVETVLFGRPIAARPVA
LRSVAEGEDVAVEGVVFAREERPTRTGAVLLLKIADGESALAVKLFLRKSDDAVRAAALQ
EGVRARFRGRVAFDPYERDLVLTADDVVRLPDRRREDRAPKKRVELHLHTAMSAMDAPLP
VAAAVRRAAEYGHAAVAITDHGVVQAYPEAYAAGEQYGVKILYGLEAYLVDDETEIVFDP
DPERRLSDDTYVVFDVETTGLSSERDTIIEIGAVKIEGGREVGAFHTFVDPGRPLPAKIV
ELTGITDAMLRGAPTPEEALARFRAFIDGATLVAHNARFDLGFLRAGLKRAGLHPFSGPA
IDTLGLARLLLPDLKNHRLDTLAEHFGVALERHHRAVDDARATAEIFLKLLQELAGRGIT
TQGALAAEKDPEAYAKVRPKHATLWATSEAGLQNLYRLVTKSHLETFHRVPRITKRDLEA
HREGLLVGSGCDEGELFDAAMNEDFDSLLRRMSFYDVVEVMPPDVYLARMDLPEAEALPI
IRQAIERLIAAAEVAGKPVVATGNVHHLDPEDVVFRRILLANQNGPRTRDPNRIRPQPYR
TTEEMLEAFAFLGREKAEEIVIHQPTAIAEAIPSMKPFPDGLFTPVIDGAEDEIRRLATE
RARAVYGDPLPAIVAERLERELRSIIDGGFAVVYLIAQKLVKKSLEDGYLVGSRGSVGSS
LVATMLGITEVNPLPPHYVCPSCHYSAFVEDGSVKDGYDLPEQACPVCGTPLHRDGHDIP
FETFMGFKGDKVPDIDLNFSGEYQAEAHRHAEAILGRTNVFRAGTISTVAEKTAYGFVRK
YLEERGENRRKAEIDWLARGTAGVKRTTGQHPGGLIVVPRGEDVHRFTPLQRPADDPASE
TITTHFDYHALSDRLLKLDLLGHDDPTVLRMLNDLTGIDPRTVPPTDPTVMALFSGTEPL
GPDVGLEAIDVRVGTLGLPEFGTRFVRGMLEETRPTTFAELVQISGLSHGTDVWVGNAQE
LIRSGVAELKDVIGCRDDIMLYLIGKGLEPQQAFRIMESVRKGKGVPPDDQEAMRAHGVP
AWYIDSCQKIKYMFPKAHAVAYVLMAVRIAYFKVYHPLAFYATYFSIRADEFDLALVLAG
EAAVREKIAELMQKGSEASAKEKNLLTVLEVAYEMLRRGFRFLPLDLERSDAFRFIPEGD
GLLVPFTAVDGLGEAAAESIVRAREDGPFLSVEDFHARTRVSKTVVDALRALGAFAHLPE
TNQMTLF
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
gtgaagggcgtgatcgaccccgccttgggcgggctgatggcgcgcgtgccgccggaggac
aagctgtccgaggcgctccaggccgcccggctcgagcggcttgtcgtctaccccgacgcc
cggcggtgggtcgtccagatcaccgcgccggccctgctcccggccgcgcccctcatcgcc
tgggaagcggcgctcggggccgccttccgggacgtggcggacgtcgagctttgggtgcgc
atcgagccgccgccgccctttcaggccgtcgcccgggggtacggggacgccctcctcggc
tacctcgcggcccgacacccgctcctcgccgccgccgtcgtcgacgtcgctttcgaggcg
gccggcgacgggcgggccgtgctttacgtcgagccggcggcgcttccggccttccaaaac
ggcgccttaaagaccctccggcgctttttcgcccaatacgtcggccggacgccggaagtc
gtcgtcctgccggcgccggacgacgccgcccgggccgccgcccggcgggagcgcctggcc
gccgccgaagaggccgcgatcgcctccgtcgcagagcggacgtctccgtccgacggagaa
ggacggccccccgccggcccgcggcagaacggaaacggcgccgccgaagcggccgccgaa
gggacggaggcggtggagacggttctcttcggccggccgatcgccgcccggccggtcgcc
ctccgaagcgtcgccgaaggggaggacgtcgccgtcgaaggcgtcgtctttgcccgggaa
gaacggccgacccggacgggggccgtcctcctcctcaagatcgccgacggcgagagcgcc
ctggcggtgaagctctttcttcggaaaagcgacgacgccgtccgggcggcggcgcttcag
gaaggcgtccgggcccgcttccgcggccgcgtcgccttcgatccgtacgagcgcgatctc
gtcctcacggcggacgatgtcgttcggcttcccgaccggcggcgggaagaccgggcgccg
aaaaagcgcgtcgagcttcacctccacacggcgatgagcgccatggacgcgccgcttccg
gtggcggcggccgtccgacgggcggcggaatacggccacgccgccgtggcgatcaccgat
cacggcgtcgtgcaggcctatccggaggcgtacgcggccggggaacaatacggcgtcaag
atcctctacggcctcgaagcgtaccttgtcgacgacgagacggagatcgtcttcgacccg
gacccggagcggcgcctttcggacgacacgtacgtcgtcttcgacgtggagacgacgggg
ctttccagtgagcgggatacgatcatcgagatcggcgccgtgaagattgaaggcggccgg
gaggtcggggcgttccacacctttgtcgatcccggccgaccgcttccggcgaagatcgtc
gagctcaccggcatcaccgacgccatgctccggggggcgccgacgccggaggaggcgctg
gcgcggtttcgcgccttcatcgacggggcgaccctcgtcgcccacaacgcccgcttcgac
ctcggctttttgcgggccggcctgaagcgggcgggacttcatccgttttccggtccggcg
atcgacaccctggggctggcgcggctccttttgccggatttgaaaaaccaccgcctcgac
accctcgccgagcacttcggcgtcgccctcgagcggcaccaccgggccgtcgacgacgcc
cgagcgacggcggagatcttcctcaagctcctccaggagcttgccggccgcggcatcacc
acccagggcgcgctggcggcggaaaaagacccggaggcgtacgccaaggtccggccgaag
cacgccaccctctgggcgacgagcgaagcgggccttcagaacctctaccggctggtgacg
aagtcccacctcgagacgtttcaccgcgtcccccggatcaccaagcgggacctcgaagcg
caccgggagggcctcctcgtcgggagcggctgcgacgaaggggaactgttcgacgcggcg
atgaacgaggacttcgacagcctcctccgccggatgagcttctacgacgtcgtcgaggtc
atgccgccggacgtctacctcgcccggatggaccttcccgaagccgaggcgcttcccatc
atccgccaggcgatcgagcgtctcatcgccgccgccgaggtcgccggaaagccggtcgtc
gccaccggcaacgtccatcacctcgacccggaagacgtcgtcttccggcgcatcctcctc
gccaaccagaacggcccccggacccgggacccgaatcgcatccggccgcagccttaccgg
acgacggaagagatgctcgaggcgttcgccttcctcggccgggagaaggcggaggagatc
gtcatccaccaaccgaccgccatcgccgaagccattccgtcgatgaagccctttcccgac
ggcctctttacgccggtgatcgacggcgccgaagacgaaatccgccgcctcgccaccgag
cgggcgcgggccgtctacggcgatccgcttccggcgatcgtcgccgagcggctcgagcgg
gagcttcggagcatcatcgacggcggcttcgccgtcgtctacctcatcgcgcaaaagctc
gtgaaaaaatccctcgaagacgggtacctcgtcggctcccgcggctccgtcggctcgtcc
ctcgtcgcgacgatgctcggcatcaccgaggtcaatcccctcccgccccattacgtctgc
ccgagctgccactacagcgccttcgtcgaagacggatcggtcaaagacggctacgacctg
ccggagcaggcgtgccccgtctgcgggacgccgcttcaccgggacggccatgacatcccc
tttgaaacgtttatgggcttcaaaggcgacaaggtgccggacatcgacctcaacttttcc
ggcgaataccaggcggaggcccaccggcacgccgaggcgatcctcggccggacgaacgtc
ttccgcgccggcacgatctcgacggtggcggaaaagaccgcctacggtttcgtccgaaaa
taccttgaagagcggggcgaaaaccgccgcaaggcggagatcgactggctcgcgcggggg
acggccggcgtcaagcggacgacggggcagcaccccggcgggctcatcgtcgtgccccgg
ggagaagacgtccaccgctttacgccgctccagcggccggcggacgacccggcgtcggag
acgatcacgacccacttcgactaccacgccctctcggaccggcttttgaagctcgacctt
ctcggccacgacgacccgacggtcctccgcatgctcaacgacctcaccgggatcgacccg
cggacggtgccgccgaccgatccgacggtgatggcgcttttcagcggcaccgagcccctc
gggccggacgtcggcctcgaggcgatcgacgtccgggtcggcaccctcgggcttccggag
ttcggcacccgcttcgtccgggggatgctcgaagagacgcggccgacgacgtttgccgag
ctcgttcagatctcgggcctctcccacggcaccgacgtctgggtcgggaacgcccaggag
ctcatccgaagcggcgtcgccgagctcaaggacgtcatcggctgccgcgacgacatcatg
ctctacctcatcgggaaggggctcgagccgcagcaggcgtttcgcatcatggaaagcgtc
cggaaagggaagggcgtcccgccggacgaccaggaggcgatgcgggcccacggcgtgccg
gcgtggtacatcgactcgtgccagaagatcaagtacatgttcccgaaggcccacgccgtc
gcctacgtcctcatggccgtccggatcgcctacttcaaggtctaccacccgctcgccttt
tacgcgacgtatttttccatccgggccgacgaattcgacctcgcccttgtccttgccggt
gaggcggccgtccgggagaagatcgccgagctcatgcaaaaagggtcagaagcgtcggcg
aaggagaaaaacctgctcaccgtcctcgaggtggcgtacgaaatgctccggcggggcttt
cgtttccttccgctcgacctcgagcggtccgacgcttttcgctttatcccggagggcgac
gggctcctcgtgccgtttaccgccgtcgacggtctcggcgaagcggcggcggagagcatc
gtccgggcccgggaagacgggccgtttctctccgtcgaagacttccacgcccggacgcgg
gtgtcgaagacggtcgtcgacgcccttcgagcgctgggcgccttcgcccacctgcccgag
acgaaccagatgacgctcttttag
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