KEGG   Hydrogenibacillus sp. N12: K2M58_03030
Entry
K2M58_03030       CDS       T07426                                 
Name
(GenBank) PolC-type DNA polymerase III
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
hyi  Hydrogenibacillus sp. N12
Pathway
hyi03030  DNA replication
hyi03430  Mismatch repair
hyi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hyi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    K2M58_03030
   03430 Mismatch repair
    K2M58_03030
   03440 Homologous recombination
    K2M58_03030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hyi03032]
    K2M58_03030
   03400 DNA repair and recombination proteins [BR:hyi03400]
    K2M58_03030
Enzymes [BR:hyi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     K2M58_03030
DNA replication proteins [BR:hyi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     K2M58_03030
DNA repair and recombination proteins [BR:hyi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     K2M58_03030
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger HHH_6 Rv2179c-like HHH_3 RNase_H_2 T2SSK DNA_pol3_a_NI DNA_pol_A_exo1 DNA_ligase_ZBD Auto_anti-p27 DUF6282 DEDDh_C
Other DBs
NCBI-ProteinID: QZA33532
LinkDB
Position
639599..643942
AA seq 1447 aa
MKGVIDPALGGLMARVPPEDKLSEALQAARLERLVVYPDARRWVVQITAPALLPAAPLIA
WEAALGAAFRDVADVELWVRIEPPPPFQAVARGYGDALLGYLAARHPLLAAAVVDVAFEA
AGDGRAVLYVEPAALPAFQNGALKTLRRFFAQYVGRTPEVVVLPAPDDAARAAARRERLA
AAEEAAIASVAERTSPSDGEGRPPAGPRQNGNGAAEAAAEGTEAVETVLFGRPIAARPVA
LRSVAEGEDVAVEGVVFAREERPTRTGAVLLLKIADGESALAVKLFLRKSDDAVRAAALQ
EGVRARFRGRVAFDPYERDLVLTADDVVRLPDRRREDRAPKKRVELHLHTAMSAMDAPLP
VAAAVRRAAEYGHAAVAITDHGVVQAYPEAYAAGEQYGVKILYGLEAYLVDDETEIVFDP
DPERRLSDDTYVVFDVETTGLSSERDTIIEIGAVKIEGGREVGAFHTFVDPGRPLPAKIV
ELTGITDAMLRGAPTPEEALARFRAFIDGATLVAHNARFDLGFLRAGLKRAGLHPFSGPA
IDTLGLARLLLPDLKNHRLDTLAEHFGVALERHHRAVDDARATAEIFLKLLQELAGRGIT
TQGALAAEKDPEAYAKVRPKHATLWATSEAGLQNLYRLVTKSHLETFHRVPRITKRDLEA
HREGLLVGSGCDEGELFDAAMNEDFDSLLRRMSFYDVVEVMPPDVYLARMDLPEAEALPI
IRQAIERLIAAAEVAGKPVVATGNVHHLDPEDVVFRRILLANQNGPRTRDPNRIRPQPYR
TTEEMLEAFAFLGREKAEEIVIHQPTAIAEAIPSMKPFPDGLFTPVIDGAEDEIRRLATE
RARAVYGDPLPAIVAERLERELRSIIDGGFAVVYLIAQKLVKKSLEDGYLVGSRGSVGSS
LVATMLGITEVNPLPPHYVCPSCHYSAFVEDGSVKDGYDLPEQACPVCGTPLHRDGHDIP
FETFMGFKGDKVPDIDLNFSGEYQAEAHRHAEAILGRTNVFRAGTISTVAEKTAYGFVRK
YLEERGENRRKAEIDWLARGTAGVKRTTGQHPGGLIVVPRGEDVHRFTPLQRPADDPASE
TITTHFDYHALSDRLLKLDLLGHDDPTVLRMLNDLTGIDPRTVPPTDPTVMALFSGTEPL
GPDVGLEAIDVRVGTLGLPEFGTRFVRGMLEETRPTTFAELVQISGLSHGTDVWVGNAQE
LIRSGVAELKDVIGCRDDIMLYLIGKGLEPQQAFRIMESVRKGKGVPPDDQEAMRAHGVP
AWYIDSCQKIKYMFPKAHAVAYVLMAVRIAYFKVYHPLAFYATYFSIRADEFDLALVLAG
EAAVREKIAELMQKGSEASAKEKNLLTVLEVAYEMLRRGFRFLPLDLERSDAFRFIPEGD
GLLVPFTAVDGLGEAAAESIVRAREDGPFLSVEDFHARTRVSKTVVDALRALGAFAHLPE
TNQMTLF
NT seq 4344 nt   +upstreamnt  +downstreamnt
gtgaagggcgtgatcgaccccgccttgggcgggctgatggcgcgcgtgccgccggaggac
aagctgtccgaggcgctccaggccgcccggctcgagcggcttgtcgtctaccccgacgcc
cggcggtgggtcgtccagatcaccgcgccggccctgctcccggccgcgcccctcatcgcc
tgggaagcggcgctcggggccgccttccgggacgtggcggacgtcgagctttgggtgcgc
atcgagccgccgccgccctttcaggccgtcgcccgggggtacggggacgccctcctcggc
tacctcgcggcccgacacccgctcctcgccgccgccgtcgtcgacgtcgctttcgaggcg
gccggcgacgggcgggccgtgctttacgtcgagccggcggcgcttccggccttccaaaac
ggcgccttaaagaccctccggcgctttttcgcccaatacgtcggccggacgccggaagtc
gtcgtcctgccggcgccggacgacgccgcccgggccgccgcccggcgggagcgcctggcc
gccgccgaagaggccgcgatcgcctccgtcgcagagcggacgtctccgtccgacggagaa
ggacggccccccgccggcccgcggcagaacggaaacggcgccgccgaagcggccgccgaa
gggacggaggcggtggagacggttctcttcggccggccgatcgccgcccggccggtcgcc
ctccgaagcgtcgccgaaggggaggacgtcgccgtcgaaggcgtcgtctttgcccgggaa
gaacggccgacccggacgggggccgtcctcctcctcaagatcgccgacggcgagagcgcc
ctggcggtgaagctctttcttcggaaaagcgacgacgccgtccgggcggcggcgcttcag
gaaggcgtccgggcccgcttccgcggccgcgtcgccttcgatccgtacgagcgcgatctc
gtcctcacggcggacgatgtcgttcggcttcccgaccggcggcgggaagaccgggcgccg
aaaaagcgcgtcgagcttcacctccacacggcgatgagcgccatggacgcgccgcttccg
gtggcggcggccgtccgacgggcggcggaatacggccacgccgccgtggcgatcaccgat
cacggcgtcgtgcaggcctatccggaggcgtacgcggccggggaacaatacggcgtcaag
atcctctacggcctcgaagcgtaccttgtcgacgacgagacggagatcgtcttcgacccg
gacccggagcggcgcctttcggacgacacgtacgtcgtcttcgacgtggagacgacgggg
ctttccagtgagcgggatacgatcatcgagatcggcgccgtgaagattgaaggcggccgg
gaggtcggggcgttccacacctttgtcgatcccggccgaccgcttccggcgaagatcgtc
gagctcaccggcatcaccgacgccatgctccggggggcgccgacgccggaggaggcgctg
gcgcggtttcgcgccttcatcgacggggcgaccctcgtcgcccacaacgcccgcttcgac
ctcggctttttgcgggccggcctgaagcgggcgggacttcatccgttttccggtccggcg
atcgacaccctggggctggcgcggctccttttgccggatttgaaaaaccaccgcctcgac
accctcgccgagcacttcggcgtcgccctcgagcggcaccaccgggccgtcgacgacgcc
cgagcgacggcggagatcttcctcaagctcctccaggagcttgccggccgcggcatcacc
acccagggcgcgctggcggcggaaaaagacccggaggcgtacgccaaggtccggccgaag
cacgccaccctctgggcgacgagcgaagcgggccttcagaacctctaccggctggtgacg
aagtcccacctcgagacgtttcaccgcgtcccccggatcaccaagcgggacctcgaagcg
caccgggagggcctcctcgtcgggagcggctgcgacgaaggggaactgttcgacgcggcg
atgaacgaggacttcgacagcctcctccgccggatgagcttctacgacgtcgtcgaggtc
atgccgccggacgtctacctcgcccggatggaccttcccgaagccgaggcgcttcccatc
atccgccaggcgatcgagcgtctcatcgccgccgccgaggtcgccggaaagccggtcgtc
gccaccggcaacgtccatcacctcgacccggaagacgtcgtcttccggcgcatcctcctc
gccaaccagaacggcccccggacccgggacccgaatcgcatccggccgcagccttaccgg
acgacggaagagatgctcgaggcgttcgccttcctcggccgggagaaggcggaggagatc
gtcatccaccaaccgaccgccatcgccgaagccattccgtcgatgaagccctttcccgac
ggcctctttacgccggtgatcgacggcgccgaagacgaaatccgccgcctcgccaccgag
cgggcgcgggccgtctacggcgatccgcttccggcgatcgtcgccgagcggctcgagcgg
gagcttcggagcatcatcgacggcggcttcgccgtcgtctacctcatcgcgcaaaagctc
gtgaaaaaatccctcgaagacgggtacctcgtcggctcccgcggctccgtcggctcgtcc
ctcgtcgcgacgatgctcggcatcaccgaggtcaatcccctcccgccccattacgtctgc
ccgagctgccactacagcgccttcgtcgaagacggatcggtcaaagacggctacgacctg
ccggagcaggcgtgccccgtctgcgggacgccgcttcaccgggacggccatgacatcccc
tttgaaacgtttatgggcttcaaaggcgacaaggtgccggacatcgacctcaacttttcc
ggcgaataccaggcggaggcccaccggcacgccgaggcgatcctcggccggacgaacgtc
ttccgcgccggcacgatctcgacggtggcggaaaagaccgcctacggtttcgtccgaaaa
taccttgaagagcggggcgaaaaccgccgcaaggcggagatcgactggctcgcgcggggg
acggccggcgtcaagcggacgacggggcagcaccccggcgggctcatcgtcgtgccccgg
ggagaagacgtccaccgctttacgccgctccagcggccggcggacgacccggcgtcggag
acgatcacgacccacttcgactaccacgccctctcggaccggcttttgaagctcgacctt
ctcggccacgacgacccgacggtcctccgcatgctcaacgacctcaccgggatcgacccg
cggacggtgccgccgaccgatccgacggtgatggcgcttttcagcggcaccgagcccctc
gggccggacgtcggcctcgaggcgatcgacgtccgggtcggcaccctcgggcttccggag
ttcggcacccgcttcgtccgggggatgctcgaagagacgcggccgacgacgtttgccgag
ctcgttcagatctcgggcctctcccacggcaccgacgtctgggtcgggaacgcccaggag
ctcatccgaagcggcgtcgccgagctcaaggacgtcatcggctgccgcgacgacatcatg
ctctacctcatcgggaaggggctcgagccgcagcaggcgtttcgcatcatggaaagcgtc
cggaaagggaagggcgtcccgccggacgaccaggaggcgatgcgggcccacggcgtgccg
gcgtggtacatcgactcgtgccagaagatcaagtacatgttcccgaaggcccacgccgtc
gcctacgtcctcatggccgtccggatcgcctacttcaaggtctaccacccgctcgccttt
tacgcgacgtatttttccatccgggccgacgaattcgacctcgcccttgtccttgccggt
gaggcggccgtccgggagaagatcgccgagctcatgcaaaaagggtcagaagcgtcggcg
aaggagaaaaacctgctcaccgtcctcgaggtggcgtacgaaatgctccggcggggcttt
cgtttccttccgctcgacctcgagcggtccgacgcttttcgctttatcccggagggcgac
gggctcctcgtgccgtttaccgccgtcgacggtctcggcgaagcggcggcggagagcatc
gtccgggcccgggaagacgggccgtttctctccgtcgaagacttccacgcccggacgcgg
gtgtcgaagacggtcgtcgacgcccttcgagcgctgggcgccttcgcccacctgcccgag
acgaaccagatgacgctcttttag

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