Hydrogenibacillus sp. N12: K2M58_07620
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Entry
K2M58_07620 CDS
T07426
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hyi
Hydrogenibacillus sp. N12
Brite
KEGG Orthology (KO) [BR:
hyi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hyi03016
]
K2M58_07620
Enzymes [BR:
hyi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
K2M58_07620
Transfer RNA biogenesis [BR:
hyi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
K2M58_07620
Prokaryotic type
tRNA splicing ligases
K2M58_07620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QZA32202
LinkDB
All DBs
Position
complement(1622520..1623782)
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AA seq
420 aa
AA seq
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MPAVTNGAAGEALVRTVRANAVVFGRHDEATLEQFRDVAARAERAALMADGHVGYIMPIG
GVAAYDGKVSVAGVGFDIACGNAAIRTDLALPSIAPHLDEIADTIAETISFGLGRTNRAP
DAPVDHPLFSDPAWDAIPADRSAREALREKAREQLGTVGGGNHYVDLFADEEDRVWVGVH
FGSRGLGFAIASGFMALASGARWGERVRETEALLDLGSDLGERYWALMHLAGAYAYAGRE
WVARKVVSLLGAREVQLVHNHHNFAWKEIHGGRELIVVRKGATPAFPGQLSFIGGSMGDI
AVIAQGKVTDDPMVRRLQEQALFSTVHGAGRLMSRTEARGRPGGKRRKAVPGKITRAMME
SWLKERGIILRGGDVDEAPQVYRRLSDVLAAQGDTIEILHTLRPIVVVMAGPDVMDPYKD
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgccggcagtgacgaacggtgcggcgggggaggcgcttgttcggacggtccgggcgaat
gccgtcgtcttcgggcgccatgacgaggcgacgctcgaacaattccgcgacgtcgccgcc
cgggccgaacgggccgccctcatggccgacgggcacgtcggctacatcatgccgatcggc
ggcgtcgccgcctacgacggcaaggtgtcggtggccggcgtcgggttcgacatcgcctgc
ggcaacgcggcgatccggacggatcttgcgcttccgtccatcgcgccgcatctcgatgag
atcgccgatacgatcgccgaaacgatctccttcgggctcgggcggacgaaccgggcgcct
gatgcgccggtcgatcatccgcttttttccgatccggcctgggacgccattccggccgac
cggagcgcccgagaagccctcagggaaaaggcgcgggaacagctcggcacggtcggcggc
ggcaaccactacgtcgatctttttgccgacgaagaagaccgggtctgggtcggcgtccac
ttcggttcccgcggcctgggctttgccatcgcctccggcttcatggcgctcgcgagcggc
gcccgctggggggagcgggtccgggagacggaagcgcttctcgacctggggagcgacctc
ggcgagcgctactgggcgctcatgcacctcgccggcgcttacgcctatgccggccgggag
tgggtggcccgcaaggtcgtctcgcttctcggcgctcgggaggtccagcttgtccacaac
caccacaacttcgcctggaaggaaatccacggcggccgggagctcatcgtggtgcggaaa
ggcgcgacgccggcctttccgggtcagctcagctttatcggcgggagcatgggcgacatc
gccgtcatcgcccaaggaaaggtgacggacgatccgatggtgcgacggctgcaggagcag
gcgcttttttcgacggtacacggcgccggccggttgatgagccggaccgaagctcggggc
cggccgggcgggaagcgccgaaaagccgtacccggaaagatcacccgggcgatgatggaa
agctggctcaaagagcggggcatcatcctccgcggcggcgacgtcgacgaagcgccgcag
gtgtaccgccggctttcggacgtcctggccgcccagggcgatacgatcgaaatcctgcat
acgcttcggccgatcgtcgtcgtcatggcggggccggatgtgatggatccgtataaggac
tga
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