Hymenobacter jejuensis: FHG12_08130
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Entry
FHG12_08130 CDS
T06049
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hyj
Hymenobacter jejuensis
Pathway
hyj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FHG12_08130 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyj03019
]
FHG12_08130 (rnr)
03016 Transfer RNA biogenesis [BR:
hyj03016
]
FHG12_08130 (rnr)
Enzymes [BR:
hyj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FHG12_08130 (rnr)
Messenger RNA biogenesis [BR:
hyj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FHG12_08130 (rnr)
Transfer RNA biogenesis [BR:
hyj03016
]
Prokaryotic type
tRNA degradation factors
FHG12_08130 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
VTT_dom
Motif
Other DBs
NCBI-ProteinID:
QDA60076
UniProt:
A0A5B7ZZV4
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All DBs
Position
complement(1990732..1993242)
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AA seq
836 aa
AA seq
DB search
MKRKDESAAPRASAKAARAPKDAPLAVSKQLVYRIFADNPGKVISYRQISRRLGVTTKEE
REQIFAHLKALRSAGQLTLIQNDDYRLTDPAAQQAATEPASSRRNRRSAEPIVPVANSQP
LDVETEFGQDPVVHRRREAGFDFPDTERPERRRRPEREETTDTITGTVALATDKYAFVIS
EESESDVRVFTDRLKFAMHGDTVRVRLRGSRDGRPVGDVVEVLKRVRPEVVGRLQVQGGI
GFVKPDNRKMYFDVFVPFENLHDARNGEKVLVRITEFPENDFGRSPMGEVVRSFGPAGQN
EAEINAIMAEFGLPFEFPIEVEAESEAIPDIIPVAEIARRRDFRDITTFTIDPADAKDFD
DALSLRKLENGHWEVGVHIADVTHYVKATSELEREAKHRATSVYLVDRVIPMLPERLSNG
LCSLRPEEDKLTFSAVFELDSTGKLYDSWFGKTIIHSDRRFSYEEAQERIESKEGDYAEE
INVLNDMAKKICAARFKQGAISFETQEVKFRLDENGKPQGVYVKERKDAHKMIEEFMLLA
NRKVAEFVFKLKNRKPRMTMVYRTHDAPDPDRLQNFALFAKKFGHDLDLTNPKKLSNELN
DLSNEVMGRPEQNVIQTLAVRTMSKAKYTTEPLGHFGLAFDHYSHFTSPIRRYPDMMAHR
LLQHYLEGGKNVEVEPVEEECKHSSEREKIAASAERASIKYKQVEFMSEVIGEQFKGVVS
GLTEWGMYVEIEENKCEGMIRLSEIPGDFFELDKDNYRVVGQRTKRIIQFGDEMLVTVKA
ANLLDRTIDFELVDNRPDFVKRREQDERSSRGGSRRSGGSNRPERERSGKGGSRRR
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaaaagacgaatcagcggctccccgcgcttccgcgaaagccgctcgcgccccc
aaagacgcacccctcgcggtatccaaacaactggtctaccgaatttttgctgacaatcct
gggaaagtcatctcttaccggcagatctcccgccgccttggcgttacgaccaaagaggag
cgggaacagatttttgcgcacctcaaagcgttgcgctcggcagggcagcttaccctaatc
caaaacgacgactatcgcttaaccgaccccgctgcgcagcaagccgctacggagcccgct
agcagccgccgaaaccgccgcagcgccgagccgatcgtgccggtagcaaacagccaaccg
ctggatgtagaaaccgagtttggccaggatccggtggtgcaccgccgccgcgaagccggc
ttcgactttccggataccgagcgccccgaacggcgccggcgtcccgagcgagaagaaacc
accgatacgattaccggcaccgtagccttggccaccgacaagtatgcatttgtcatcagc
gaggaaagcgagtccgacgtgcgggttttcaccgatcgcttaaagtttgccatgcacggc
gatacggttcgggtacggttgcggggctcccgcgacggccgtccggtgggcgacgtggtg
gaagtgcttaagcgggtgcgtcccgaggtagtggggcgcttgcaggtgcaaggcggcatc
gggtttgtgaagcccgataatcgcaagatgtacttcgacgtgtttgtgcctttcgaaaac
ctgcacgatgcccgcaacggcgaaaaagtgctggtgcgcatcacggagtttccggagaat
gactttggccgctcgccgatgggtgaggtggtacggagcttcggaccggcggggcaaaat
gaagccgagatcaacgcgatcatggcggagtttgggctgccctttgagttccctatcgag
gtagaggccgaatcggaagcaattcccgacataattccggtggccgaaatcgcgcggcgc
cgcgactttcgcgacatcaccaccttcaccatcgacccggccgatgccaaggattttgac
gatgccttgtcattgcgcaaactcgaaaacggccattgggaagtgggtgtgcacatcgct
gatgtaacgcattatgtgaaagccacttctgaattggagcgcgaagctaagcaccgggct
acttcggtttacctcgtcgaccgggttattccaatgctacccgagcgtttgtcgaacggg
ttgtgctcgctgcgccctgaggaagataagctgaccttctcggctgtgtttgaactcgat
tcaaccggcaagctctacgattcgtggtttggcaaaaccatcattcactccgaccgtcgc
ttctcctacgaagaggcgcaggagcgtattgaaagtaaggaaggcgactacgcggaggaa
attaacgtcctcaacgacatggccaagaagatctgtgcggcacgcttcaaacaaggcgcc
atcagcttcgaaacgcaggaagtgaagttccgtctcgacgaaaacggcaagccgcagggc
gtgtacgtgaaggagcggaaggacgcgcacaaaatgatcgaggagtttatgctgctcgcc
aaccgcaaggtggccgagtttgtgtttaagctcaagaaccgtaagccgcggatgacgatg
gtgtaccgtacgcacgatgctcccgatccagaccgtttgcaaaactttgcgctcttcgcg
aagaagtttgggcacgatctcgacctgacgaaccctaagaagctcagcaacgagctaaac
gatctgtcgaacgaagtgatgggccgccccgagcaaaacgtcatccagacgctagccgtc
cgtaccatgtcgaaagccaaatacactaccgagccactgggccactttggcctggccttc
gatcactattcgcacttcacgtcgcccatccgtcgctaccccgacatgatggctcaccgc
ctgcttcagcattacctggaaggcggcaaaaacgtggaggtagaacccgtagaggaagag
tgcaaacactcgtcggagcgcgagaaaattgcggccagcgccgagcgcgccagcatcaaa
tacaagcaggtggaattcatgtcggaagtcatcggcgagcagttcaaaggcgtcgtatcg
ggccttaccgaatgggggatgtacgtcgagattgaagagaacaagtgcgaaggcatgatt
cgactcagtgagattcccggcgacttttttgagctcgacaaagacaactaccgcgtcgtg
ggccagcggaccaagcgcatcattcagttcggcgacgagatgctggtgaccgtgaaagct
gccaacctgctcgaccgaaccattgatttcgaactggtcgataatcggccggactttgtg
aagcgccgcgaacaggacgagcggagtagccggggcggcagtcgccgtagcggcggcagc
aaccgccctgagcgagagcgcagcggaaaaggcggtagccgccgacggtag
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