Hymenobacter jejuensis: FHG12_11680
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Entry
FHG12_11680 CDS
T06049
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hyj
Hymenobacter jejuensis
Pathway
hyj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FHG12_11680 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyj03021
]
FHG12_11680 (rpoB)
03400 DNA repair and recombination proteins [BR:
hyj03400
]
FHG12_11680 (rpoB)
Enzymes [BR:
hyj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FHG12_11680 (rpoB)
Transcription machinery [BR:
hyj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FHG12_11680 (rpoB)
DNA repair and recombination proteins [BR:
hyj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FHG12_11680 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
YtxH
DUF8806
Motif
Other DBs
NCBI-ProteinID:
QDA62552
UniProt:
A0A5B8A7L1
LinkDB
All DBs
Position
2830118..2833984
Genome browser
AA seq
1288 aa
AA seq
DB search
MQAADERINFAKIKKVIEYPDFLDVQVRSFMDFFQLETAAENRTDEGLFKVFAENFPISD
SRENFVLTFIDYHVDPPKYSVDECIDRGLTYSVPLKAKLRLVCNDTDNEDFETIEQEVFL
GNIPYMTEKGSFVINGAERVIVSQLHRSPGVFFAQSKHTNGTKLYSARIIPFKGSWIEFA
TDVNNVMYAYIDRKKKFPVTTLLRAIGYGTDKDILDLFGLSEEVKAEKKALKKAVGRKLA
ARVLRTWTEDFVDEDTGEVVSIDRNEVLLERDSTIEEEDIDTILNAGAKSVILHRENVNI
ADFAIIYNTLQKDNSNSEKEAVEQIYRQLRNTEAPDEETARDIIQKLFFSDKRYDLGDVG
RYRINKKLGLDKNWDARVLTNEDIVLIVKYLIGLINSKAVVDDIDHLSNRRVRTVGEQLY
AQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPL
AEVTHKRRVSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHARV
NSMGFIETPYRAVENGKVDVSENVKYLTAEEEDTHHIAQANARIDDEGNFINDLVKGRFE
GDFPVVEPQEYTYMDVAPNQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLKPQAPI
VGTGLEGRTAIDSRALVVAEGSGTIDYVDANKIIVKYDLTEDDILVSFDAERVSYDLIKF
RRTNQDTCINLTPIVKRGQRVEKGQPLCEGYGTNNGELALGRNMQVAFMPWQGYNFEDAI
VISERVVRDDIFTSIHIEEFELEVRETKRGEEELTSEIPNVSEEAVRNLDDNGIIRLGAE
VREGDILIGKITPKGETDPTPEEKLLRAIFGDKAGDVKDASLKAPPSLNGVVIGTKLFSR
PKKDKNLRAKSKKEVEELKDRYAQELRGVKSVMVDKLVQLLEGKTSQGIKHKFGDEILSK
GVKFGKKNIAEALFPEKNPYKDESNYAVPEEVNMFKDLMLDNWTADDKVNGMVTQLVKNY
TKRRNTITARFKRDRFTLEVGDELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGVVAR
IVRDEDMPFLPDGTPMDIVLNPLGVPSRMNIGQIYETVLGWAGLKLGRTYATPIFDGATE
EEVSRELTEAGLPTFGRAYLHDGLTGQRFDQPVTVGVIYMLKLGHLVDDKMHARSIGPYS
LITQQPLGGKAQFGGQRFGEMEVWALEAFGASNVLQEILTVKSDDVIGRAKAYEAIVKGD
VLPKPNIPESFNVLIHELRGLALEITLD
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagctgctgacgagcggatcaatttcgccaagattaaaaaggttatcgagtatccc
gacttcctagacgtgcaagtgcgctcgtttatggatttcttccagttggagacggccgcc
gagaaccggaccgacgaggggctcttcaaggttttcgccgagaactttccaatttcggat
tcgcgcgaaaactttgttttaacatttattgattatcacgtcgatccaccgaaatactcg
gtggatgagtgcattgatagaggtctgacttattcggtacctctgaaagctaagctgcgt
ctggtgtgtaacgacaccgacaacgaagattttgaaacgattgagcaggaagtgtttttg
ggtaacatcccatacatgaccgaaaaaggctcattcgttatcaatggtgctgagcgggtt
attgtatcgcaattgcaccgttcgccaggcgtgttctttgctcaaagcaagcacacaaac
ggcacgaaattatattcggcgcgcattattccgttcaagggttcgtggattgagtttgcc
acggacgtgaacaatgtaatgtatgcatacatcgaccggaaaaagaagtttccggtgacc
acgcttcttcgggcaatcggttacggcacggataaagacattctcgacttgttcggattg
tctgaggaagtaaaggctgagaaaaaagctctgaagaaggcagtaggccgcaagctggct
gcccgggttctgcgcacttggacagaagatttcgtggatgaggataccggtgaggtggta
tctattgatcgtaacgaagtactgctagagcgtgactcgactattgaggaggaagatatc
gacactattctgaatgcgggtgccaagtcggtaatccttcatcgtgaaaacgtgaatatt
gctgacttcgcaatcatttataacacacttcagaaggacaactctaactcggagaaagaa
gccgttgagcaaatctatcgtcagctccgcaacacggaagcccctgatgaagaaactgct
cgtgacatcatccaaaagctgtttttctcggataagcgctacgaccttggtgacgtaggc
cgctaccggatcaataagaagctgggccttgataagaactgggatgcgcgcgttctaacg
aacgaagacatcgtgctgattgtcaagtacttaatcggtttgataaattccaaggcggta
gtcgatgatattgaccacttgtcgaatcgccgggtacgcacggtgggggagcaactttac
gcccaatttggtgtaggtctggcccgtatggcgcgtactatcaaggagcgcatgaacgtg
cgtgataacgaggactttaagcctgttgacttgatcaacgcgcgtacgctgtcgtcggta
atcaactcgttcttcggcactaatcagctttcccagttcatggaccagactaacccgctg
gctgaggtgacgcataagcgtcgcgtatcggcactggggccaggaggtctgtcgcgtgag
cgtgcgggtttcgaagtacgtgacgttcattacacgcactatggtcgtctttgcacgatc
gaaacaccggaaggacccaatatcggtctgatttcgtcgctgtgcgtgcatgctcgtgtc
aattcgatgggattcatcgaaactccttaccgtgctgtagagaacggcaaagttgacgtt
agcgagaacgtaaaatatctgactgctgaagaggaagatacccaccacattgcacaggcc
aacgcccgtattgatgatgagggtaacttcattaacgatttggtgaaaggacgttttgaa
ggtgacttcccggttgtagaaccgcaggagtatacctatatggacgttgccccaaaccag
attgtatcggtagctgcttcactgattccattcttggaacatgatgacgccaaccgtgcg
ctgatgggatcgaacatgcaacgccaagcagtgccgctgttgaagccacaagctccaatc
gtgggtactggtctggagggtcgtactgcaattgactcacgtgcactggtagtagccgaa
ggctcaggtactatcgattatgttgatgctaataagatcatcgttaagtacgatcttacg
gaagacgacatcttagtgagcttcgatgctgaacgggtttcttacgacctgatcaaattc
cgtcggactaaccaagatacctgcatcaacctgactccgattgtaaaacgcggtcagcgc
gtggagaagggccaaccgctatgcgaaggctacggcacgaacaacggtgagctggctttg
ggtcgtaacatgcaagtggcatttatgccatggcagggttacaacttcgaggatgctatc
gtgatctcggagcgtgtagttcgtgatgacatcttcacttcgattcacatcgaagaattt
gagttggaagttcgcgaaaccaagcgtggcgaagaagaactgacgtcggagattccgaac
gtgagcgaagaagctgttcggaatctcgacgacaacggtatcatccgtttaggcgctgaa
gttcgcgaaggtgatattcttatcggtaagattacgccgaaaggtgaaactgatccgact
ccagaagagaagctactccgcgccatctttggtgacaaagccggcgatgtgaaggatgcc
tcgcttaaagcgccgccctcactcaatggggttgttatcggtacgaagctattctcacgt
ccgaagaaggataagaacctgcgcgccaagtcgaagaaggaagtagaagagttgaaagac
cgctacgcccaagagcttcgtggtgtgaaatcggtgatggttgacaagctcgtgcaattg
ctggaaggcaagacgtcgcaaggcattaagcacaagtttggcgatgaaatcctgagcaaa
ggcgtgaagtttggcaagaagaatatcgctgaagcgctcttccccgaaaaaaacccttac
aaggacgagagcaactacgctgtgccggaagaggtcaacatgttcaaagacctcatgctg
gacaactggactgctgatgacaaagtgaatggcatggtgacgcaattggtgaaaaactat
accaagcgtcgcaacaccatcactgcccgtttcaagcgcgaccggtttacactggaagta
ggagatgagcttccagctggcatcgtacagttagccaaagtttacattgccaagaagcgt
aagctgaaggtaggtgataagatggctggtcgtcacggtaacaagggggttgtagcccgt
atcgttcgcgatgaggatatgcctttcttgccagatggtacgcccatggacatcgtgctt
aacccgctcggtgtacctagccgtatgaacatcggccagatctatgagactgtgttgggc
tgggctggcttgaagctgggccgtacctacgctaccccaattttcgacggcgctaccgaa
gaggaagtatcgcgagaattgacggaagctggtctgccaacctttggccgggcttacttg
cacgatggcctgacgggtcagcgtttcgaccagccggtaacggttggtgtcatctacatg
ctgaagctgggtcaccttgtcgatgacaagatgcacgctcgttcgatcggaccctactcg
ctcatcacgcagcagccgctgggtggtaaggctcagttcggtggtcagcgtttcggcgag
atggaagtgtgggcactggaagccttcggtgcgtcgaacgtgctgcaggaaatcctgacg
gtaaaatcggacgacgttatcggccgagccaaagcgtacgaagccattgtaaaaggcgac
gtattgccgaagccaaatatccccgagtcattcaacgtactcattcacgagttgcgcggt
ctggccctggaaatcacgcttgattaa
DBGET
integrated database retrieval system
