Hymenobacter jejuensis: FHG12_12930
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Entry
FHG12_12930 CDS
T06049
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hyj
Hymenobacter jejuensis
Pathway
hyj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FHG12_12930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyj03021
]
FHG12_12930
03019 Messenger RNA biogenesis [BR:
hyj03019
]
FHG12_12930
Transcription machinery [BR:
hyj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FHG12_12930
Messenger RNA biogenesis [BR:
hyj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FHG12_12930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
AAA_16
NACHT
Motif
Other DBs
NCBI-ProteinID:
QDA60951
UniProt:
A0A5B8A0I4
LinkDB
All DBs
Position
3106474..3108588
Genome browser
AA seq
704 aa
AA seq
DB search
MYTIDELKDRLLSELKEIAEVLNVGNFKKLSKQDLIYKILDQQAITPADKLPKKTLKPGA
AKGEDEPTTDEAVAAPAVVRAAPAPRANGRQSAAPRENRRAAAPTSQPASAPEAAVAEAT
PAPTPEPAPVIAEVPAEAVTPAPTENGAATDRPVRLYQRPERRSRNGERPRNAPDGQPIA
VNGHENGAASTPAVAAAVVEAPVLAAPAEAVVAMPAPREARPETAPTAFVREPRESREPR
ENRGDQPREFRENREQRAEGVREGREYRNDQPREARPLRDQPRDRDQRRDDRFAAREQQR
QQRQGEPREPREPRQGAEPRQNDQQAQRPRNDFEISIQSEGTLELMPDGGYGFLRSPFYN
YLSSPDDIYVAPQQVKQYALKAGDTVKCTIRPPREGEKYFALISVEGINGRTVEEARDRI
PFNNLTPLFAEERLKLTTKPNLLSTRILDLFAPIGKGQRGLIVAQPKTGKTVLLQEIANA
ISENHPEVYLIILLIDERPEEVTDMARSVKAEVLSSTFDETADRHVKIASIALDKAKRLV
ECGHDVVILLDSITRLARAYNTVQPASGKILSGGVDANALHKPKRFFGAARNVENGGSLT
IIATALIETGSKMDEVIFEEFKGTGNMELQLDRKLANKRVFPAIDVPASGTRREDLLMGK
DELNRIWVLRKFMSDMTATEAMEFLKDRMKGTQSNSEFLVSMNG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtacactattgatgaattgaaggaccgtctgctttctgagttaaaggaaattgcagaa
gtacttaacgtcggtaacttcaagaaactaagcaagcaagatctgatttataagatcctt
gatcagcaagcaattaccccggccgacaaactgccgaagaaaacacttaagcccggcgct
gccaaaggcgaagacgagcctacaacggacgaagccgtagcagctccagccgttgtgcgg
gcggcccctgcaccccgagccaatggccgccagagtgccgcaccgcgcgaaaaccgccgc
gctgccgcacctacctctcagccggcgtccgcgccagaagccgccgttgcggaagcgacg
cccgctccgacgccagaacctgccccagtcatcgctgaagtgccggccgaagcggttacc
ccggcacctaccgaaaacggcgctgctaccgatcgtccggtaagattatatcagcgccct
gagcgccgcagccgcaatggggaacgcccacgcaatgcccctgatggacagccaattgct
gtcaacggccatgaaaatggcgctgcaagtactccagccgtcgctgctgccgtggtagaa
gcgccagttctggcggctcccgcagaagccgttgttgcaatgccagcgccccgcgaagct
cgccccgaaactgcgcctaccgcttttgtgcgtgagccgcgtgaaagccgcgaaccccgc
gaaaaccggggcgaccagccgcgggaattccgcgaaaaccgtgaacagcgcgccgagggc
gtacgcgaaggccgtgagtaccgcaacgatcaaccacgggaggcgcgtccgttgcgcgat
cagcctcgtgaccgcgaccagcgccgcgacgaccgctttgcagcccgcgaacagcagcgt
cagcagcgccaaggcgagccgcgcgaaccccgggagccacggcaaggcgctgagcctcgt
cagaacgatcagcaggcccaacgcccgcgcaacgatttcgaaatcagcattcagagcgaa
ggcaccctggaattgatgccggatggtggctacggtttcttgcgttcgccattctataac
tatctctcgtcgcccgacgacatttacgtggcgccgcagcaagtaaagcagtatgcttta
aaagctggtgacaccgtaaaatgcacgattcggccaccgcgtgagggcgaaaaatacttc
gcgctgatcagcgtagaaggcatcaacggccgcacggtggaagaagcccgcgatcgcatc
ccgttcaacaatcttacgccgctgtttgcggaagagcgcctcaagctgactaccaagcct
aacttgctcagtacacgcatcttagacttgtttgctccgattggcaaaggtcagcgtggc
ctgatcgtggcccagcctaaaacgggtaagacggtgctgttgcaggaaattgccaacgcc
atttctgaaaaccacccggaagtttacctgatcatcttgttgatcgacgaacgcccggaa
gaagtaacggacatggcgcgttcggtaaaagccgaggtgctaagctctaccttcgacgaa
acggccgaccgccatgtcaaaatcgccagcattgcgttggacaaagccaagcgtttggta
gaatgcggccatgacgtggtcattctgctcgactccattacgcgcttggcgcgggcttac
aacacggtacagcccgcttccggcaaaatcctgtcgggtggtgtggatgccaacgcgctg
cacaagccaaagcgcttcttcggagctgcacgtaacgtggaaaacggtggttctctgacc
attatcgctacggctctgatcgaaaccggttccaagatggatgaagtgatctttgaagaa
ttcaaaggcactggcaacatggaattgcagctcgatcgcaagctggccaacaagcgcgtg
ttcccggccatcgacgtaccggcttccggtactcgccgcgaagacttgctcatgggcaaa
gacgagctcaaccgtatctgggtgttgcgcaagtttatgtccgacatgacggctactgag
gccatggaattcctcaaagaccgcatgaaaggcacgcagagcaacagcgagttcttggtg
tcgatgaacggctaa
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