Hymenobacter jejuensis: FHG12_15885
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Entry
FHG12_15885 CDS
T06049
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hyj
Hymenobacter jejuensis
Brite
KEGG Orthology (KO) [BR:
hyj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hyj03016
]
FHG12_15885
Enzymes [BR:
hyj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FHG12_15885
Transfer RNA biogenesis [BR:
hyj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FHG12_15885
Prokaryotic type
tRNA splicing ligases
FHG12_15885
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDA61487
UniProt:
A0A5B8A2T8
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All DBs
Position
3828981..3830417
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AA seq
478 aa
AA seq
DB search
MAKATNKLHSKDLRQLGFTDEATISLALDILDQRQFRKLDKGSAQALLQEIQTDPHKFVR
DEDWRPLAQKLVPQPSRDVKLNLEIKDYRRYGDAFIEDGARKQMDTAMQLPITIDGALMP
DAHQGYGLPIGGVLAADNAVIPYGVGMDIGCRMCLSVFDLPPRYLDQRTQELRKLLLNNT
RFGGKEVFKNPTDDPVLERPEFKEIAVVRGKREAAINQMGSSGSGNHFVEWGVVEISAED
NELNLPVGQYLGLLSHSGSRGLGAAIAQHYTKVAMNKCPLPPEARYLAWLDMNSQEGQEY
WRAMNLAGDYASACHHDIHRRLSKALGENALAQVENHHNFAWKETLSDGREAIVHRKGAT
PAGEGVLGVIPGSMTAPGFIVRGRGERDSLQSASHGAGRRMSRGQAMKTLKEGEVHRYLR
DHGIELIGGGLDEAPMAYKDIHQVMAHQRDLVDVLGSFTPKIVRMDAGKSGKSRYGGE
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggcgacaaacaaactgcacagtaaagacctccggcagctcggttttaccgac
gaggctaccatcagtttggccttggatattttggaccagcggcagtttagaaagctggat
aaaggcagcgcgcaggcgttgttgcaggaaatccaaaccgatccgcacaagtttgtgcgc
gacgaagattggcggcccttggcgcagaaactcgtgccgcagcccagccgcgacgtcaag
ctcaacctcgaaatcaaggattatcgtcgttacggcgacgccttcatcgaagatggcgcc
cgcaagcagatggatacggccatgcagctgcccatcaccatcgacggcgctctcatgccc
gacgcgcatcagggctatggcttgcccatcggcggcgtgctggccgccgacaatgccgtg
attccgtacggtgtgggcatggacattggctgccggatgtgcttgtcggtgtttgactta
ccgccgcgctacctcgatcagcggacgcaggagttgcgcaagctgctgctgaacaacacc
cgctttggcggcaaggaagtcttcaaaaaccccaccgatgacccggtgctggagcgcccg
gaattcaaagaaatcgcggtggtgcgcggcaagcgcgaagctgccatcaaccaaatgggt
tcttcgggctccggcaaccactttgtggagtggggtgtggtggagatctcggccgaagac
aacgagctgaaccttccggttggtcagtatttggggctgctttcgcacagcggctcgcgc
gggctgggggcggccatcgcgcagcactatactaaagtggccatgaataagtgcccgctc
ccgcccgaagcacgctacctcgcgtggctcgacatgaactcccaggaagggcaagaatac
tggcgggccatgaacttggccggtgactatgcttcggcctgtcaccacgacatacaccgc
cggctcagcaaagccttgggcgagaatgcattagcccaagtcgaaaaccaccacaacttt
gcctggaaagaaacgctatcggacgggcgcgaagccattgtgcaccgcaagggcgccacg
ccggctggcgaaggtgttctcggtgtcattccgggctccatgacggctcccggcttcatc
gtgcgcgggcgcggcgagcgcgattccttgcaatcggcctcgcacggcgccggccgccgg
atgtcgcgcggccaagccatgaaaacactcaaggaaggggaggtgcaccgctacctccgc
gaccacggcatcgaactcatcggcgggggccttgacgaagcacccatggcttataaggac
attcaccaagtaatggcccatcagcgcgacctagtagatgtactgggctcgtttacgccc
aaaatcgtgcgcatggacgccggcaaaagcggaaagagcaggtatggcggtgaatag
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