Hymenobacter yonginensis: O9Z63_13550
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Entry
O9Z63_13550 CDS
T08743
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hyk
Hymenobacter yonginensis
Brite
KEGG Orthology (KO) [BR:
hyk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyk03019
]
O9Z63_13550 (hrpB)
Enzymes [BR:
hyk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
O9Z63_13550 (hrpB)
Messenger RNA biogenesis [BR:
hyk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
O9Z63_13550 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
AAA_30
AAA_19
AAA_11
nSTAND3
DUF2497
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WBO83405
LinkDB
All DBs
Position
3149453..3152128
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AA seq
891 aa
AA seq
DB search
MQFPDLPIVAALPDLLAALSQHERVVLQAPPGAGKTTVVPLALLEAAWRDGGRILMLEPR
QLAARAAATRLAKLLHEPVGETVGYRVRLESKVSSRTRIEVITEGILTRLIQDDPALEGV
AAVIFDEFHERSLRADLGLALALDAQAVLRPELRILVMSATLEAERMGAWLQAPVVSSAG
FLFPVETHYLSPRQAAAGGSRPAERLATLVPTAVREALRQHPTGDVLVFLPGLADLRRVA
DKLQPALPDAVQLHLLHGELPLAEQDAALRPVPAGQRKIVLSTAISETSLTIEGVTVVVD
GGFARVPRFQARTGFSTLETVPVSQAAADQRRGRAGRLGPGTCYRLWTAAEHDALPAYLP
PEILTADLSGLALELALWGAAPQSLRWLDAPPAPALALAHDLLRRLGAVVGDGVVSGDEV
NSDEVNMNSDEAGSSLSTFSPHHPITSSPKNTSSLPLKPTPHGRALARLGLAPRLGHLVV
RGHELGHGPAAAALAALLSERDVLRAADAHPTPPDLRLRFEAIASGRAPLPGLLVQHNTL
HRVRDAARNLRQRAGIRDAATSADADAAGLLTALAYPDRLAQRETPDRVRLATGQRVALP
AEHFGRDDQFLAVAYLDGPPHQLRAALAAPVSRQELEELFSEQIEQVDEVRWDAATGRVQ
ARRQRRLGALLLSDAALPQPDTNLVAAALLEALRTAGVACLPWSGAATALRQRLAFLHTH
FPETWPDVSDEALAAELDEWLDPHLPGLRSLNDVSRLDWPELLLQRLPGGWAQRQELDRL
APAHLEVPSGSHVALDYTDPTTPVLAVKLQELFGLVETPAVAGGRVPLLLHLLSPGGRPA
QVTRDLHSFWEKGYFEVRKDLKGRYPKHPWPDKPMEHVPTKLTKKRFEANQ
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgcaattccccgacctcccgatagtagccgccctgcccgacctgcttgcggcgctcagc
cagcacgagcgggtggtgctacaagccccgcccggcgccggcaaaaccaccgtggtgccg
ctggcgttgctggaggccgcctggcgagacggaggccggattctgatgctggagccccgg
cagttggccgcccgcgccgccgccacccgcctggccaagctcctgcacgagcccgtaggc
gaaaccgtgggctaccgcgtgcggctggaaagcaaggtttccagccgcacccgcattgag
gtcatcaccgaaggcatcctgacgcgcctcatccaggacgacccggccctggaaggcgtg
gcggccgtcatcttcgacgaattccacgagcgcagcctgcgcgccgacctgggtttagcg
ctggccctcgatgcccaggccgtgctgcggcccgagctgcgcattctggtgatgagcgcc
acactggaagccgagcgcatgggggcttggctgcaggccccggtggtgagcagcgcgggc
tttctgttcccggtcgagacgcactacctgagcccgcgccaggccgcggccggcggcagc
cgccccgccgagcgactggccacgctggtgcccacggccgtgcgcgaagccctgcgccag
caccccaccggcgacgtgctggtgtttctgcccggcctcgctgacctgcgccgcgtggcc
gacaagctacagcccgccctgcccgacgccgtgcagctgcacctgctccacggcgagctg
cccctggccgagcaggacgcggccctgcgcccggtgccggccgggcagcgcaaaatcgta
ctcagcacggctatttcggaaaccagcctcaccattgagggcgttacggtagtagttgac
ggcggctttgcgcgggtgccgcgcttccaagcccgcaccggcttcagcacccttgaaacc
gtgcccgtcagccaggctgccgccgaccagcgccggggccgcgccggccgcctcgggccc
ggcacctgctaccgcctctggaccgccgccgagcacgacgccctgcccgcctacctgccc
cccgaaatcctcaccgccgacctcagcggcttggccctggagctggctctctggggcgcc
gccccgcaaagcctgcgctggctcgacgcgccccccgcccccgccctggccctcgcccac
gacctgctccgccgcctgggagccgttgttggtgatggagttgtttcaggtgatgaggtg
aacagtgatgaagtgaatatgaatagtgatgaagctggttcatccctttccaccttttcc
ccccatcaccccatcacctcatcacctaaaaacacctcatcacttccactgaaacccacg
ccgcatggccgggcgctggcgcggctggggctggcgccgcggctgggccatctggtggtg
cgtgggcacgaactgggccacggccccgccgccgccgcgctggcggcgctgctctcagag
cgcgacgtgctacgcgccgctgatgcccatcctaccccgcccgatctgcggctgcggttt
gaggccattgccagcgggcgggcgccgctgccgggcttgctggtgcagcacaacaccctg
caccgcgtccgcgacgcggcccgcaacctgcgccagcgcgccggaatccgcgacgcggct
acctcagcggatgctgacgcggccggcctgctcacggccctggcctaccccgaccgcctg
gcccagcgcgaaaccccggaccgggtgcgcctcgccaccggccagcgcgtggccctgccc
gccgagcatttcggccgcgacgaccaatttctggccgtggcctacctcgatggcccgcca
caccagctgcgcgccgcgctggccgcgcccgtgagccgccaggagctggaagagctgttt
tcggagcagattgaacaagtggacgaggtgcgctgggatgccgccaccggccgcgtgcag
gcccgacgccagcgccgcttgggcgcgctgctgctctccgatgccgccctgccccaaccc
gacaccaacttagtagcggccgccctgctggaggccctgcgcacggcaggcgtggcatgc
ctgccgtggagcggggccgccacggcgctgcggcagcggctggcgtttctgcacacacac
ttccccgaaacctggcccgacgtgtcggatgaggcgctggcggcggagctggacgagtgg
ctggacccacacctgccgggccttagaagcctgaacgatgtaagccgcctcgactggccc
gagttgctgctgcagcgcctgcccggcggctgggcgcagcgccaggagctggaccgcctc
gcccctgcccacctggaggtgcccagcggctcgcacgtcgccctcgactacaccgacccc
accacgccggtactggccgtgaagctgcaggagctgtttggcctcgtcgaaacgcccgct
gtggccgggggccgggtgccgctgctgctgcacctgctctcgcccggcggccgccccgcc
caggtcacccgcgacctgcacagcttctgggagaagggctacttcgaggtgcgcaaagac
ctgaaaggccgctaccccaagcatccctggcccgacaagcccatggagcacgtgcccacc
aagctcaccaaaaagcgcttcgaggcgaatcagtag
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