Hymenobacter yonginensis: O9Z63_14145
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Entry
O9Z63_14145 CDS
T08743
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hyk
Hymenobacter yonginensis
Pathway
hyk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O9Z63_14145 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyk03021
]
O9Z63_14145 (rpoC)
03400 DNA repair and recombination proteins [BR:
hyk03400
]
O9Z63_14145 (rpoC)
Enzymes [BR:
hyk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O9Z63_14145 (rpoC)
Transcription machinery [BR:
hyk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O9Z63_14145 (rpoC)
DNA repair and recombination proteins [BR:
hyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O9Z63_14145 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WBO83521
LinkDB
All DBs
Position
complement(3278569..3282921)
Genome browser
AA seq
1450 aa
AA seq
DB search
MAFAKNKKLVQDFSKVTISLASPESILERSNGEVVKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVVQPGVLGDEGVQQLDFLTEDEYLDIIDKLPRENQMLPN
EDPNKFIARMGADALHLLLERINLDELSYSLRDSAAHETSQQRKAEALKRLRVVEAFRDA
STRIENKPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDA
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPRLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGPAAILEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVTKGKRSTDDEKIQ
GEGRIFYSDEEVVIAINEGQLSKHAYIKVRTQVRDEDDNLVTKIIETVAGRVLFNQLVPT
EVGFVDELLTKKKLQQIISMVFKRTGMARTAQFLDDIKTLGFQSAYKGGLSMGLGDIQIP
KEKDALVLQAQNDVKAVTQNYQMGLITDNERYNQVIDIWTRINNQITETLMGRLEKEDQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNENDCGTLRGIETFALKDNEDV
VEPLAERILGRVAVHDIVDPLTDEVILTAGTEITEDITRRIDATSIESVEIRSVLTCESK
RGICAKCYGRNLSSGRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVEASLK
AKFAGVIEFEDIRTVETANADGEMVKVVMGRSGEIRIVEKGTGKVFISNHVPYGSFLLVD
EGQEVEKGAELNNWDPYNAVILAEFDGTIQYDAITEGITYREESDEQTGHREKVIIESKA
KDQNPAIIVRPGKKGDVEGQKAYSIPVGSHLNVENGEKIKAGQILAKIPRAVGKTRDITG
GLPRVTELFEARNPSNPAVVAEIDGVVTYGTVKRGNREIFVESKDGVKKKYMVPLSKHIL
VQDNDFIRAGSPLSDGAITPSDILSIQGPGAVQEYLVNEIQEVYRLQGVKINDKHIEVVV
RQMMQKVVILDAGDTTFLEHQVIDKIVFMEENDTIIDMKVVTNSGDSTNLKPGQIVTARR
LRDENSSLRRRDLALVEVRDAQPSVSRPTLQGITQASLGTQSFISAASFQETTKVLSEAA
IRGKADELLGLKENVIVGHLIPAGTGLREYTRQIVGSKEELEAQQAAKADETPAPTKRPA
RASRRESVSE
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgcaaaaaacaagaaactggtacaggacttctcgaaagtcaccatttcgctg
gcctcgcccgaatccatcctggagcggtcgaacggtgaggttgtgaaacccgagacgatc
aactaccggacgtacaagcccgagatgggcggcctgttttgcgagcggattttcggtccc
gtgaaggactgggaatgccactgcggcaaatacaagcggattcgctacaaaggcatcatc
tgcgaccgttgcggcgtggaggtgaccgagaagaaagtacgccgggagcggatgggccac
atcgaactggtggtgcccgttgcgcacatctggtacttcaagtccctgcccaataaaatc
ggctacctgctgggcctgcccaccaagaagctcgaccaaatcatctattacgagcggtac
gtagttgtacagcctggcgtattaggcgacgaaggcgtgcagcagctcgacttcctcacc
gaagacgaatacctcgacatcatcgacaagctcccccgggagaaccagatgctgccgaac
gaggaccccaacaagttcatcgcccgcatgggtgccgatgccctgcatctcctgttggag
cgcatcaacctggacgaactgagctactcgctgcgtgactctgccgctcacgagacttcg
cagcagcgtaaggctgaagcgttgaagcgtctgcgcgtagtggaagcgttccgcgacgcc
tcgacccgcatcgagaacaagcctgagtggatggttatccgcatggtgccggtgattcca
ccggaactgcgcccgctcgttccactggacggtggccgtttcgctacctccgacctgaac
gacctgtaccgtcgcgtcatcatccgcaacaaccgcctcaagcgcctgatcgaaatcaag
gctcccgaggtgattctgcggaacgaaaagcgcatgttgcaggaagctgtggattcgctg
ttcgacaactcgcgtaaggtgaatgccgtgcgcgctgaaggcaaccgcgccctgaagtcg
ctgtccgacatgctgaaaggcaagcagggccgcttccgtcagaacctgctcggtaagcgt
gtcgactactcgggtcgttcggtaatcgtggtaggtcctgaactgaagctgcacgagtgc
ggtctgcccaagaacatggcggccgaactgttcaagccgttcatcatccgcaagctcatc
gagcgtggcatcgtgaagacggtgaaatcggctaagaagattgtggaccgcaaggacgcc
gtcgtatgggatatcctggagaacgtgctgaaaggccacccagtgctcctgaaccgggct
cctacgcttcaccgtctgggtatccaggcgttccagccgcgcctcatcgagggcaaggct
atccagctgcacccgctcgtttgtacggccttcaacgctgactttgacggtgaccagatg
gctgtgcacgttcccctgggaccggccgctatcctggaagcctccatgctcatgctggcg
tcgcacaacatcctgaacccagccaacggcgccccgattgcggtaccgtcgcaggacatg
gttctgggtctgtactacgtaaccaaaggcaagcgcagcaccgacgacgagaagatccag
ggcgaaggccgcatcttctactccgacgaagaggtggtgattgccatcaacgaaggtcag
ctgtcgaagcacgcctacatcaaagtgcgcacgcaggttcgcgacgaggacgataacctc
gtaacgaagatcatcgagacggtagccggccgcgtgctgttcaaccagctcgtaccaacc
gaagtaggtttcgtggatgagctgctgaccaagaaaaagctgcagcagatcatttcgatg
gtgttcaagcggaccggtatggcccgcaccgcacagttcctcgacgacatcaagacgctg
ggcttccagtcggcttacaaaggtggtctgtcgatgggtctgggcgacatccagattccg
aaagagaaggatgccctggttctgcaagcgcagaacgacgtgaaggccgttactcagaac
taccagatgggtctgattaccgacaacgagcgttacaaccaggttatcgacatctggacc
cgcatcaacaaccaaatcactgaaaccctcatgggtcgtcttgaaaaagaagatcagggc
ttcaactcgatttacatgatgatgcactccggtgcccgtggttcgcgcgagcagattcgt
cagctcggcggtatgcggggtctgatggcgaagccgcagaagtcgctgcagggttcggta
ggcgagattatcgaaaacccgattctgtcgaacttcaaagaaggcctcgatgtaatcgag
tacttcatctcgacccacggtgcccgtaagggtctggccgacaccgctctgaagacggct
gacgccggctacctgacgcgtcgtctggtagacgtatcgcaggacgtaatcgtaaacgaa
aacgactgcggcacgctgcgtggcatcgaaaccttcgcgttgaaagacaacgaggacgtg
gtagagccgctggccgagcgtatcctgggccgcgtagctgttcacgacatcgtggatccg
ctgaccgacgaagtaattctgacggccggtacggaaatcaccgaggacatcacccgtcgt
atcgatgctactagcatcgagtcggtggaaattcgttcggtactgacctgcgaaagcaag
cgtggtatctgcgctaagtgctacggccgcaacctgtcgtcgggccgcatggtgcagaaa
ggcgaggctgttggcgtaattgctgcgcagtccatcggcgagcctggtacccagctcacg
ctgcgtaccttccacgtaggtggtacggcttccaacattgccgttgaagccagcctgaaa
gccaagtttgccggcgtaatcgagttcgaagacatccgcaccgtggaaaccgccaacgcc
gacggcgagatggtgaaagtggtaatgggtcgttcgggcgagattcgcatcgtggagaaa
ggcaccggcaaggtgttcatctccaaccacgttccgtacggctcgttcctgctcgtggac
gaaggccaggaggtggagaaaggcgccgagctgaacaactgggacccctacaacgccgtt
attctggccgagtttgatggcaccattcagtacgatgccatcaccgagggtatcacctac
cgcgaggagtcggacgaacagaccggtcaccgcgagaaagtgattatcgaatcgaaggcc
aaggatcagaacccggccatcatcgttcgtcccggcaaaaaaggggatgtggaaggccag
aaagcatacagcattccggtaggctcccacctcaacgtcgagaacggcgagaaaatcaag
gctggtcagattctggccaagattccgcgtgccgtgggcaaaacccgcgacatcaccggt
ggtctgccccgtgttacggagctcttcgaagcccgtaacccctcgaacccagctgtagta
gctgaaatcgacggcgtggtaacctacggtacggtgaagcgtggtaaccgcgaaatcttc
gtggagtcgaaagacggtgttaagaagaagtacatggtgccgctgtccaagcacattctg
gtgcaggacaacgacttcatccgcgccggctcgccgctgtcggatggggccatcacgcct
tccgacatcctgagcattcagggccctggcgccgtgcaggaatacctcgtgaacgagatt
caggaagtataccgcctgcagggtgtgaaaatcaacgataagcacatcgaggtggtcgtc
cgccagatgatgcagaaagttgtgattctcgacgccggcgacacgacgttcctggagcac
caggttatcgacaaaatcgtgttcatggaggaaaacgataccatcatcgacatgaaggtg
gtaacgaactccggcgactcgaccaacctgaagcccggccagattgtaacggctcgtcgc
ctgcgcgacgagaacagcagcctgcgccgccgcgacctggccctggtggaagtgcgcgac
gcacagccttcggtatcccgtccaacgctgcagggtatcacccaggcgtcgctgggcacc
cagtcgttcatctcggccgcttccttccaggagacgaccaaggtgctgtcggaagccgcc
atccgtggcaaggccgacgaactgctgggcctgaaggagaacgtaatcgtaggtcacctc
attccggccggtaccggtctgcgcgaatacacgcgtcagatcgtgggctcgaaagaggag
ctggaggcccaacaggccgccaaagccgacgagacgcctgcgcctaccaagcgccccgcc
cgtgcctcgcgccgcgagtccgtttcggagtaa
DBGET
integrated database retrieval system
