Hymenobacter yonginensis: O9Z63_18200
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Entry
O9Z63_18200 CDS
T08743
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hyk
Hymenobacter yonginensis
Pathway
hyk02020
Two-component system
hyk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hyk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
O9Z63_18200 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
O9Z63_18200 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyk03021
]
O9Z63_18200 (rpoN)
Transcription machinery [BR:
hyk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
O9Z63_18200 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_12
SF3b1
Thioredoxin_4
NES_C_h
DUF3942
Motif
Other DBs
NCBI-ProteinID:
WBO84290
LinkDB
All DBs
Position
complement(4219601..4221187)
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AA seq
528 aa
AA seq
DB search
MQRLDMKQLLSQKLSPQQIQFIKLLQIPTVELEARIKEELEANPALEEGDEADDDFEDQE
TGDDSGDDTDDFDDPDAEFDNPDNTLEEDFDQGSEEQPEIELPAKDEPVEQKESESADDL
DLSDYLNDDEIAGYKMQGDGPGDDDDDREMPLADTSGSLIDSLLDQLGFASLDEKQEAIG
RQLIGSIDGDGYIRRDLSAIANDLAFAQNIEATEAEVESVLHVVQSFDPAGIGARDLQEC
LLLQLERRPQDEATEHAEQILNETFDEFTKKHYPRIQQKLDLEDDELKDAIALILKLNPK
PGGTGPVGMGKVQYIIPDFILTNDNGSFNLTLNSRNAPDLRVSPAYTEMFRAYDKGAKKD
KKLKEAVTFVKQKLDSAKWFIDAIRQRQNTLLRTMDAIVRYQREFFAEGDESKLRPMILK
DIAQEISMDISTVSRVANSKSVQTEFGIYPLKYFFSEGIATDSGEDASSREVKHILKEII
EGEKKDRPLSDDKLEKMLNARGYNIARRTVAKYREQLNIPVARLRKEL
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgactggacatgaagcagcttctctcgcagaagctgagcccgcaacagatccaa
ttcattaagctgctgcaaatcccgacggtggagctggaagcccgcatcaaggaggagctg
gaagccaaccccgctttggaagaaggcgacgaagccgacgacgacttcgaggaccaggaa
accggcgacgatagcggcgacgataccgacgacttcgacgacccggacgccgagttcgac
aaccccgacaatacgctggaggaggacttcgaccagggcagcgaggagcagcccgaaatc
gagctgcccgccaaagatgagcccgtggagcagaaggagtcggaaagcgccgacgacctc
gacctgagcgactacctcaacgacgacgaaatagccggctacaaaatgcagggcgacggc
cccggcgacgacgacgacgaccgggaaatgcccttggccgacaccagcggctcgctgatc
gacagcctgctcgaccagctgggcttcgccagcctcgacgagaagcaggaagcaattggc
cgccagctcatcggctctatcgacggcgacggctacatccgccgcgacttgtcagctatt
gccaacgacctggcctttgcccagaacattgaggccaccgaggccgaggtggaaagcgtg
ctgcacgtggtgcagagcttcgacccggccggcatcggggcccgcgacctgcaggagtgc
ctgctgttgcagctggagcgccgcccgcaggacgaggccaccgagcacgccgagcagatc
ctcaacgaaaccttcgacgagttcaccaaaaagcactacccccgcattcagcaaaagctg
gacctggaagacgacgagctgaaggatgccattgccctgattctcaagctcaaccccaag
cccggcggcaccggccccgtgggcatgggcaaggtgcagtacatcatccccgacttcatc
ctgaccaacgacaacggcagcttcaacctcacgctcaactcgcgcaacgcccccgacctg
cgcgtaagcccggcctatacggagatgttccgggcctacgacaagggcgccaagaaagac
aagaagctcaaggaagccgtgaccttcgtgaagcagaagctggactcggccaagtggttt
attgatgccatccggcagcgccaaaacacgctgctgcgcaccatggacgccattgtgcgc
taccagcgcgagttcttcgccgagggcgacgagagcaagctgcgcccgatgattctcaag
gacatagcccaggaaatcagcatggacatcagcaccgtgagccgggtggccaactcgaaa
tcggtgcagacggagtttggcatctacccgctcaagtacttcttctccgaaggcattgcc
accgattcgggcgaggatgccagctcgcgcgaggtgaagcacatcctgaaggaaatcatc
gagggcgagaagaaagaccggcccctgagtgacgacaagctggaaaaaatgctgaacgcc
cgcggctacaacattgcccgccgcaccgtggccaagtaccgcgagcagctcaacatcccg
gtggcccgcctgcgcaaagagctgtag
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