Hydrogenophaga crassostreae: LPB072_04090
Help
Entry
LPB072_04090 CDS
T04505
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hyl
Hydrogenophaga crassostreae
Pathway
hyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hyl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LPB072_04090
09124 Replication and repair
03420 Nucleotide excision repair
LPB072_04090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyl03021
]
LPB072_04090
03036 Chromosome and associated proteins [BR:
hyl03036
]
LPB072_04090
03400 DNA repair and recombination proteins [BR:
hyl03400
]
LPB072_04090
Enzymes [BR:
hyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LPB072_04090
Transcription machinery [BR:
hyl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LPB072_04090
Chromosome and associated proteins [BR:
hyl03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
LPB072_04090
DNA repair and recombination proteins [BR:
hyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LPB072_04090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
PDDEXK_1
ResIII
HBB
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AOW12149
UniProt:
A0A167HF18
LinkDB
All DBs
Position
complement(850876..853164)
Genome browser
AA seq
762 aa
AA seq
DB search
MTPLPGEAQHCAVAVRALCEFGAKEGDLDLRFTPSPSGAEGVAGHTTVTGRRPVGYQREL
PLSARFEELTVTGRADGFDPDARRVEEIKTHRGDVNAIPPNHRALHWAQARVYGWMLCQQ
LSIEQIEVALVYFNIDTAEETLLTETQTASDLRTHFEALCQRYIGWAREQSAHRLQRDAA
LLELAFPFADFRPGQRKLTETVYRAQGRAQAGERILMAQAPTGIGKTMATLFAALKAAPR
QGIDKVFYLTAKTPGRQLALDALKRLNSAGHLRVLERVARDKACEHPDKACHGASCPLAQ
GFYDRLPEARATAAKVEWMDKATLRDTALAHTVCPYYLGQEMVRWSDVLVGDFNHYFDHG
AAWHALTEANEWRVSLLIDEAHNLIERTRLMHSAAMEPGAFQALRQSAPPALKKPLDKLH
RQWGKLAKEHFEAYAVLPELPGEWVEALQATCHAIGEHFAEHPADATGSLQTWWFEALHF
QRVAETFGDHSLCDLSRDAWAMNKSGKPSHPAINLRNIVPAPLLEDRWATAHSATLFSAT
LAPMDYVANLLGLPEDTTRLEVPSPFAAEQLQVRVAPHISTRWSDRLTSLTPMADVMAEQ
FEAEPGNYLAFFSSFDYLQQALDRLQERHRFVPTWAQSRGMTEPDREAFIARFTDDSQGI
GFAVLGGAFGEGIDLPGHRLIGAFIATLGLPQLNPVNEQMRARLQQRFGRGYDYAYLYPG
LQKVVQAAGRVIRSETDHGTVWLMDDRFGKAEVKRLLPAWWS
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
gtgacacccctgcccggcgaagcacaacactgcgccgtggcggtgcgcgcgctgtgcgaa
ttcggcgccaaggaaggcgacctcgacctgcgtttcaccccgtcgcccagtggcgccgaa
ggcgtggccggccacaccaccgtcaccgggcgccgccccgtcggctaccagcgcgagctg
cccttgagcgcccgcttcgaagagctgaccgtcaccggccgcgccgatggcttcgacccc
gatgccaggcgcgtggaagaaatcaagacccaccggggtgatgtcaacgcgatcccgccc
aaccaccgcgccctgcactgggcgcaggccagggtctacggctggatgctctgccagcaa
ctctccatcgaacagatcgaagtcgcgctggtctacttcaacatcgacacggccgaagaa
accctgctcaccgaaacccagaccgccagcgacctgcgcacccatttcgaggcgctgtgc
cagcgctacatcggctgggcgcgcgaacagagcgctcaccgcctgcaacgcgacgcggcc
ctgcttgagctggcgtttccgttcgccgacttccgtccgggccagcgcaagctgaccgag
accgtgtaccgcgcccagggccgcgcccaagcgggcgaacgcatcttgatggcgcaggcg
cccaccggcattggcaagaccatggccacgctgttcgccgcgctcaaggccgcgcccagg
caaggcatcgacaaggttttttacctgaccgccaaaacaccggggcgccagctcgcactc
gatgccctgaagcggctgaacagcgccggccacctgcgggtgctcgaacgggtcgcccgc
gacaaggcctgcgaacaccccgacaaagcctgccacggcgcttcgtgcccgctggcccag
ggcttttacgaccgcctgccggaggcccgcgccacggccgccaaggtcgagtggatggac
aaagccaccctgcgcgacaccgccctggcccacaccgtttgcccctactacctgggccag
gaaatggtgcgctggagcgatgtgctcgtgggcgatttcaaccactacttcgaccacggc
gccgcctggcacgcgctcaccgaagccaacgaatggcgggtgagcctgctgatcgacgaa
gcccacaacctgatcgagcgcacgcgcctgatgcacagcgccgccatggaacccggtgcc
tttcaggcactgcgtcagagcgcgccgcccgccttgaaaaagccgctggacaagctgcac
cgccaatggggcaagctcgccaaggaacacttcgaagcgtatgccgtgttgcccgagctg
cccggcgaatgggtggaagcgctgcaagccacctgccacgccatcggcgaacacttcgcc
gaacaccccgctgacgccaccggctctttacaaacctggtggttcgaagccctgcacttt
cagcgcgtggccgagacctttggcgaccacagcctgtgcgatctgtcgcgcgatgcgtgg
gccatgaacaaatccggcaaacccagccacccggcgatcaacctgcgaaacatcgtgccc
gcgcccctgctggaagaccgctgggccaccgcccacagcgccaccctgttttccgccacg
ctggcgcccatggactacgtggccaacctcctcggtctgcccgaagacacgacgcgcctg
gaggtgccctcgccttttgcggccgagcaattgcaggtgcgcgtggcgccccacatctcc
acccgatggagcgaccgcctgacctcgctcacccccatggccgatgtgatggccgagcag
tttgaagccgagcccggcaactacctcgcgttcttcagcagcttcgactacctgcaacaa
gccctcgaccgcctgcaagagcgccaccgctttgtgcccacctgggcccaatcgcgcggc
atgaccgaacccgaccgggaagccttcatcgcaaggttcaccgacgacagccagggcatc
ggcttcgccgtgctcggcggcgcattcggcgaaggcatcgacctccccggccaccgcctc
atcggcgccttcatcgccaccctgggcctgccgcagttgaacccggtcaacgaacagatg
cgcgcccgactgcagcaacgcttcggccgcggctacgactacgcctatctgtacccaggc
ctgcaaaaagtggtgcaagccgccggccgcgtgatccgcagcgagacggaccacggcacg
gtgtggttgatggatgaccggtttgggaaagcggaggtgaagcggttgttgccggcctgg
tggagttga
DBGET
integrated database retrieval system
