Hydrogenophaga crassostreae: LPB072_07545
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Entry
LPB072_07545 CDS
T04505
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hyl
Hydrogenophaga crassostreae
Pathway
hyl03410
Base excision repair
hyl03430
Mismatch repair
hyl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LPB072_07545
03430 Mismatch repair
LPB072_07545
03440 Homologous recombination
LPB072_07545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyl03400
]
LPB072_07545
DNA repair and recombination proteins [BR:
hyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LPB072_07545
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LPB072_07545
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPB072_07545
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Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AOW12718
UniProt:
A0A162P2W6
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Position
complement(1629709..1631445)
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AA seq
578 aa
AA seq
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MKITTRDVPPRAAWALEQGGLHPLLARLFASRGITQSAELDDSLARLIPPSEMKGAAEAA
RALADAMAAKQRICIVADYDCDGATACAVGLRGLRLLGAPMGYDGASYLVPDRVTDGYGL
TPAIARRVKASGADVLVTVDNGIASLDGVRAARELGLQVIVTDHHLPALKEGEIVVPDDC
IIVNPNQPGCTFESKSIAGVGVMFYVLLALRAELRDRGVFTPQTQPKIDALLPLVALGTV
ADVVKLDANNRRLVAQGLKRVRAGAMPPGMMALFNVAARKYPVATSFDFGFALGPRLNAA
GRLADMTLGIECLATDDALRADELARTLDGINRERKAIEGDMRDQALALAEEMFDESEEP
PPALIVFDPDFHEGVVGIVASRLKDKMHRPTFVFAASGAEGKEHELKGSGRSIPGFHLRD
ALDLVAKRHPGVLLRFGGHAMAAGCTIEEEHLETFEGALQLVAHEWLDAATLERRMEADG
VLDKQYRRTDLVDTLHKEVWGQGFAPPVFCEEVQIVSQRLVGEKHLALKMKHQGDPVDGI
WFGHTEPLPERVKLAFRLDADEWQGQRRVRFLVEAAEL
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcaccacccgcgatgtgcccccccgcgccgcctgggcgctcgaacaaggcggc
cttcacccactgctggcccgcctgttcgcctcccgaggcatcacccaaagtgccgaactc
gacgactcgcttgcccgcctgatccccccttctgaaatgaaaggagcagccgaagcggcc
agggctctggccgacgccatggccgcgaagcagcgcatctgcatcgtggccgactacgac
tgcgatggcgccactgcctgcgccgtgggcctgcgcggcctgcgcctgctgggtgcgccc
atgggttacgacggcgcaagctacctggtgcccgatcgcgtgaccgacggctacggcctc
acgcccgccatcgccaggcgggtcaaagcctccggtgccgatgtcctggtcacggtcgac
aacggcatcgccagcctcgacggcgtgcgcgccgcacgtgaactgggcctgcaggtgatc
gtgaccgaccaccacttgccagccctcaaggagggcgaaatcgtggtgcccgacgactgc
atcatcgtcaaccccaaccagcccggctgcacatttgaaagcaagtccatcgcgggtgtg
ggggtgatgttttatgtgttgctggccttgcgcgccgagctgcgggatcgcggcgtcttc
actccacaaacgcagcccaagatagatgcgctgctgccgctggtggcgctcggcacggtc
gccgacgtggtcaagcttgatgccaacaaccgccgcctcgtggcgcaaggcctgaagcgc
gtgcgcgcaggcgccatgccgccgggcatgatggcgctgttcaacgtggcggcgcgcaag
taccccgtggccaccagcttcgactttggctttgccctcggcccgcgcctgaacgccgct
ggccgcctggccgacatgacgctgggtattgaatgcctggccaccgacgacgccctgcgc
gccgacgaactcgcccgcacgctcgacggcatcaaccgcgaacgcaaggccatcgaaggc
gatatgcgcgaccaggcgctggccctggccgaagagatgttcgacgaatccgaagagccg
ccaccggccctgatcgtttttgaccccgatttccacgaaggtgtcgtcggcatcgtggcc
tcgcgcctcaaagacaagatgcaccgccccaccttcgttttcgcggccagtggcgcagaa
ggcaaggaacacgagctcaaaggctcaggtcgctcgatccccggctttcatctgcgcgat
gcgctcgatcttgtggccaagcgccaccccggtgtcttgctgcgcttcggcggccacgcc
atggctgccggttgcaccatcgaagaagagcacctcgaaacctttgaaggcgccttgcag
ctcgtggcccacgaatggcttgatgctgccacgctggaacggcgcatggaagccgacggt
gtgctcgacaagcagtaccgccgaaccgacctggtcgacaccctgcacaaagaagtctgg
ggtcagggctttgccccgcccgtgttctgcgaagaagtgcaaatcgtgagccagcggctg
gtgggcgaaaagcacctggcgctgaagatgaaacaccagggcgatccggtggacggcatc
tggttcggccacacggagccactgcctgagcgggtcaaactggccttcagactggacgct
gatgaatggcaaggccagcggcgcgtgcggttcctagtagaagcagctgagctctag
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