Hydrogenophaga crassostreae: LPB072_09865
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Entry
LPB072_09865 CDS
T04505
Name
(GenBank) lytic transglycosylase
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
hyl
Hydrogenophaga crassostreae
Brite
KEGG Orthology (KO) [BR:
hyl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hyl01011
]
LPB072_09865
Enzymes [BR:
hyl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
LPB072_09865
Peptidoglycan biosynthesis and degradation proteins [BR:
hyl01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
LPB072_09865
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Gene cluster
GFIT
Motif
Pfam:
SLT
LysM
NMB0315_dom_I
LysM1_NFP_LYK
LysM3_LYK4_5
LPAM_MltD
Motif
Other DBs
NCBI-ProteinID:
AOW13111
UniProt:
A0A1D8NVI5
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All DBs
Position
complement(2120422..2122137)
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AA seq
571 aa
AA seq
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MSATPLHKKPTRARSSTTRLAAFLALSLGVFLAGCVGVVDPRKAAAVKPAPTSTGSSTVN
APEVVRPAPAVANAPKAVYSAPLSPITASTVSSRSVASLAAPNDIWDRIRRGFAMTDLNS
DLVRDKEQWYASRPDYLQRMTDRSNRYLFHIVEEIERRGMPSELALLPFIESAFNPQAVS
SARAAGMWQFMPATGESFDLKQNVFRDDRRDVLASTQAALDYLQQLHDRFGDWHLALAAY
NWGQGNVNRAITRNQQAGLPTDYNSLDMPTETRQYVPKLQAVKNIVAFPETFNAQLPDIG
NHPFFDAISISQDIDVALVIRLAEINEADFRALNPSLKQPVVMSAGTPQILLPWDNANVF
ERRLAEHKGPLASWTVWVVPSTLSVSEAARRVGMSESELRSVNNIPPRMQVRAGSSLLVA
RSSQRDNDVSEYVADNARLSLQPEAVARRASVRVRSGDTLSGIARRYGMSTADLAKLNNL
SARARLRTGQRLAVAGSSSQSAKVVVIRESQLAAKRSSSSSKTSKSSRVKIKVKRASATR
SSKNSRTSKAQSSSAKKSPAKSSPAKKKKRS
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccacgcctttacacaaaaagcccacccgggccaggtcatcaaccacccggctt
gccgccttcctcgcattgagcctgggcgtgtttctcgccggttgcgtgggcgtggtcgat
ccacgcaaagccgctgcggtcaagccagcacccacctcgaccgggtcgtcaacggtgaat
gcgccagaagtggtgaggccggcgcccgctgtcgccaatgctcccaaagcggtgtacagc
gcgccgctcagtcccatcacagcttcgacggtcagcagccgatcggtggcctcactggcc
gcacccaacgacatctgggatcgcattcggcgcgggtttgccatgaccgacctcaacagc
gatctggtacgcgacaaagagcagtggtatgccagccgccccgattacctgcaacgcatg
acggaccgctcgaaccggtacctgtttcacatcgttgaagaaatcgagcgccgtggcatg
ccgtccgaactggctttgctgcccttcatcgagagcgcgttcaacccccaggccgtctcc
agtgcccgcgccgccgggatgtggcaattcatgcccgcaacgggcgaatcgtttgacctg
aagcagaacgtgttccgcgatgatcgccgcgatgtgctggcgtcgacacaggccgcactc
gactaccttcaacagctccacgaccgctttggtgactggcacctggcgctggccgcctac
aactggggccagggcaacgtcaaccgagcgatcacccgcaaccagcaggccggtctgccc
accgactacaacagcctggacatgcccacggaaacacgtcagtacgtgccaaaacttcag
gccgtgaaaaacatcgtggccttcccggagacgttcaacgcccagctgcccgacattggc
aaccacccgttctttgatgccatttccatctcccaggatattgatgtggcgctggtcatt
cggctggccgagatcaacgaagccgatttccgcgccctcaacccttcgctgaagcagcct
gtcgtcatgtctgccggtacgcctcagattcttttgccatgggacaacgccaacgtattc
gaacgccggctcgccgagcacaagggcccgctggcctcctggacagtgtgggtggttccc
agcaccctttctgtcagtgaggcagccaggcgcgtgggcatgagcgaatccgaactgcgc
agcgtcaacaacatcccgccacgcatgcaggttcgggctggttccagcctgctggtggcg
cgcagctcgcaacgcgacaacgacgtgagcgagtatgtcgcggacaacgcccgcctgagc
ctgcaaccagaagcggttgcccggcgcgcgagcgtcagagtgcggtctggcgacaccttg
agcggtattgcccggcgctacggcatgagcacggccgatctcgccaagctcaacaacctg
tcggcccgtgcccggctgcgcaccggtcagcgcctggctgtggcaggatcgtccagccaa
agtgccaaggtggttgtgatccgggaaagccaactggcggccaagcgctcgtcgagttcg
agcaagacgagcaaatcatccagggtgaagatcaaagtcaagcgggcctccgcgacgcgc
agcagcaagaacagccgaacctcaaaagcacaaagcagctcggccaagaagtccccggcc
aaatcatcgccagccaagaagaaaaagcgctcctga
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