Hydrogenophaga crassostreae: LPB072_10375
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Entry
LPB072_10375 CDS
T04505
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyl
Hydrogenophaga crassostreae
Pathway
hyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB072_10375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyl03019
]
LPB072_10375
Enzymes [BR:
hyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB072_10375
Messenger RNA biogenesis [BR:
hyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB072_10375
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
DUF6231
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AOW13200
UniProt:
A0A167IFB2
LinkDB
All DBs
Position
complement(2242602..2243858)
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AA seq
418 aa
AA seq
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MPFTSLGLAPSLAQAAANLGFTAPTPIQAEAMPIVLRGDDLLATAQTGSGKTAAFALPLL
QRWLSTPPTTGTRPLLTLVLVPTRELAAQVGEVFRSLAEPLTRRPKIVVAFGGVSINPQM
MALRGGADIVVATPGRLLDLIDNNALKLGSVQHLVLDEADRLLDLGFADELGRLLAQLPP
RRQTLFFSATFAPAVETLANSMLQDPERVEVPVVKSDVAVIEQRVFEVDDKRRTQLLRQL
IKDHGWERVLVFVSSQYAAEHLAAKLHKNDVFATSFHGGLSQGARKQTLQEFKEKRWDVL
VTTDLASRGLHIDQLPVVVNFDLPRSADDYTHRIGRTGRAGESGLAISFVTAASAAHWRV
IEKRQGLSLPREQYAGFEPIETEPAGTHDPEGTGGIKGKRPSKKDKLRAATAAQKPND
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgccattcacttccctaggcctcgcgccctccctcgcccaagccgctgccaacctcggt
ttcacagcgcccaccccgattcaggcagaagccatgcccatcgtgctgcgtggcgacgac
ttgctcgccaccgcccagaccggctccggcaaaaccgcggctttcgctttgccactgttg
cagcgctggttgtccaccccgcccacaaccggcacccgcccactgcttacgctggtgctc
gtgccaacccgcgaactggccgcccaggtgggcgaagtgtttcgcagcctcgccgagccg
ctcacccggcgtcccaagattgtggtggcctttggcggcgtgtccatcaacccccagatg
atggccctgcgcggtggtgccgacatcgtggtggccacacccgggcgccttctcgacttg
atcgacaacaacgcgctcaaactgggcagcgttcagcacctggtactcgacgaagccgat
cgactgctcgaccttggctttgccgacgaactgggccgtctcctggcccaactgccaccc
aggcgccagacgctgttcttctccgccaccttcgcaccggcggtggaaacgctggccaac
tcgatgctccaggaccccgaacgggtcgaagtgcccgttgtgaaaagcgatgtggcggtg
atcgagcagcgtgtgttcgaggtagacgataaacggcgcacacagttgctgcgccagctc
atcaaagaccatggctgggaacgcgtgctggtttttgtgtcaagccaatacgcggccgaa
cacctggccgccaaactgcacaaaaacgatgtgtttgccacctcgttccacggtggtctg
agccagggtgcgcgcaagcagaccttgcaggaattcaaggaaaagcgctgggacgtgctg
gtgaccaccgacctcgcctcacgcggcctgcacattgatcaactgccggtcgtggtgaac
ttcgacctgccccgctcagccgatgattacacccaccgcatcggccgaaccgggcgtgcg
ggcgaaagcggcctggctatcagctttgtcaccgccgccagcgccgcccattggcgtgtg
atcgaaaagcgccaaggcctgagcttgccgcgcgaacaatacgcaggctttgaacccatt
gaaaccgagcctgccggcactcatgacccggaaggcacgggcggtatcaagggcaagcgc
ccgagcaaaaaagacaagcttcgcgccgccacagcagcgcaaaagcccaacgattaa
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