Hydrogenophaga crassostreae: LPB072_16880
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Entry
LPB072_16880 CDS
T04505
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hyl
Hydrogenophaga crassostreae
Pathway
hyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB072_16880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyl03019
]
LPB072_16880
03009 Ribosome biogenesis [BR:
hyl03009
]
LPB072_16880
Enzymes [BR:
hyl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LPB072_16880
Messenger RNA biogenesis [BR:
hyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPB072_16880
Ribosome biogenesis [BR:
hyl03009
]
Prokaryotic type
rRNA processing factors
LPB072_16880
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AOW14265
UniProt:
A0A162Z4R1
LinkDB
All DBs
Position
3674854..3677835
Genome browser
AA seq
993 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFQGSVAPSQARINDVIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRQELKAALDQLEYPNGMSIIARTAGIGRDAAELQ
WDLNYLLKLWTAIDGAALGGKGAFLIYQESSLVIRAIRDYFNSDIGEILIDTDDIFEQAH
QFMAHVMPEHEHRVKRYRDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDQTEALVAV
DVNSARAIKGGDIEETATRTNLEAADEVARQARLRDLGGLIVIDFIDMDESKNRREVENR
LRDALRQDRARVQFGSISKFGLLEMSRQRLKPTLSEGSSIPCPRCGGSGHIRDTESSALQ
ILRVIQEESLKDSTAAVLVQVPVEVASFLLNEKRTEITKIELKQRINVLLVPNKSLDTPN
YKLERLKHDDPRLDNLDSSYKLADEPEDATSFTRRSQERTNKQEPLIKGVLPDGPAPVAL
PKADKVDAVAKVAAAAVAPIAKAPAVLAEKGFFGWLKTLFGVAELTAPAPVQPTKDTVKE
EPKEARGEQRRDGRGGRGGRNSEGRGSRDGGRNARGGEGRSERNSDRNGARVDGRNAENR
GEPRPVEGRGESAQGDRRSGGRGEGRNGGRRDNRREMPQADEANNNASAQVIGNEAGNDA
ADNGENQRRERRPRNDNRRRPQATDEAGNAPAQQLVSDDSVQTAPGPEGDTSNSETGEQR
APRERRSRDRYGRDRRERGPRDAQAQAGDDTIADSTVPTAEATPANVGETPQEEAPVRSS
YFSLPVETAPTAVAAIAAVDVAPEQVAEVVEPVRAPQADVVAAPAEAPKPRPQPSMAASA
VEETTKGLPKVAAYVLPMDAMSEVARASGLEWVNSDVERVALAQAAIAAEPKPIHVPREI
KPVELVDEGPLVLVETRKDLNKVTLPFEGTSAT
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttgatcaatgccacgcaggctgaagaacgccgcctggccatcgtcgac
gggcaaaaactgctcgactacgaaatcgaaatcgaaggacgcgaacagcgcaaaggcaat
atctacaaggccgtggtcacccgcgtcgagccttcgctggaagcctgcttcgtggattac
ggcgaagaccgccacggctttttgccgttcaaggaaatctcgcgtcagtatttccagggc
agcgttgcaccgtcccaagcccgcatcaacgatgtgatcaaggaaggccaggaactgctg
gtccaagttgagaaagaagagcgcggcaacaaaggcgctgccctgactaccttcgtcagc
ctggctggccgctatgtggttctgatgcccaacaacccacgtggtggtggcgtttcgcgc
cggatcgaaggcgaagaccgccaggaactgaaggccgctctcgaccagctcgaatacccc
aacggcatgagcatcatcgcgcgcaccgccggcattggccgcgacgccgccgaactgcag
tgggacttgaactacctgctgaagctctggaccgctattgatggtgccgccctaggcggc
aaaggcgctttcctgatctaccaggagtcgagtctggtgattcgcgccatccgcgattac
ttcaacagcgacatcggcgagattctgatcgacaccgacgacatcttcgaacaagcgcac
cagttcatggcgcacgtcatgcccgagcacgaacaccgtgtgaagcgctaccgcgatgac
gcgccgctgttcagccgcttccagatcgaacaccagatcgaaaccgcgttcagccgcacg
gtcaacctgccctcgggcggcgccatcgtgatcgaccagaccgaagcactggtggccgtg
gacgtgaactctgcgcgcgccatcaagggcggcgacatcgaagagaccgctacccgcacc
aacctggaagccgccgacgaagtggcccgccaggcccgtttgcgcgacttgggtggcctg
atcgtgatcgacttcatcgacatggatgagtcgaaaaaccgccgcgaagtggaaaaccgc
ctgcgcgacgcgttgcgccaggaccgcgcccgcgtccagtttggctccatcagcaagttt
ggcctgctcgaaatgagccgccagcgcctgaagcccacgctcagcgaaggttcgtcgatt
ccctgcccgcgatgcggtggctctggccacatccgcgacaccgaatcttcggcgctgcag
atcttgcgcgtgatccaggaggagtcgctcaaagacagcacggcagcggtgctcgtgcag
gtgccggtcgaagtggccagcttcctgctcaacgagaagcgcaccgagatcaccaagatc
gaactcaaacagcgcatcaacgtgctgctcgtacccaacaaatcgctggacacgcccaac
tacaagctcgaacgtctcaaacacgacgacccccgcctggacaacctggactccagttac
aagctggccgacgagcctgaggacgccacaagcttcacacgccgcagtcaggagcgcacc
aacaagcaggagcccttgatcaagggtgtcttgcctgatggccctgcgcccgtggcactt
cccaaagcggacaaagtggacgcggtggccaaagtggcagcggctgccgtggcgcctatc
gccaaagcgcctgccgtgctggcagaaaaaggtttctttgggtggctcaaaacgctgttt
ggcgttgccgagctgaccgctcccgcaccggtgcaaccgaccaaggacacggtaaaagag
gaacccaaggaggcgcgtggcgaacaacgccgcgatggccgaggtggtcgtggtggccgg
aacagcgaaggtcgcgggtcacgcgacggcggccgcaacgcacgcggcggtgaaggtcgc
agtgagcgcaacagtgatcgaaatggtgcccgggttgatggtcgcaatgccgaaaaccgc
ggcgaaccgcgtccagtcgaaggccggggtgaaagcgctcaaggcgaccgccgctcgggt
ggtcgaggtgaaggccgcaacggcggtcgccgcgacaaccgccgcgaaatgccacaggct
gacgaggcgaacaacaacgcgtctgctcaggtcatcggcaacgaggctggcaatgacgct
gcggacaatggtgagaaccaacgccgtgagcgccgtccacgcaacgacaatcgccgccgc
ccgcaagccactgacgaggccggcaatgctccggcgcaacaactggtgagcgatgattcc
gttcaaacggctcccggcccagaaggtgacaccagcaacagcgagacaggcgagcaacgc
gccccacgcgagcgccgcagccgtgaccgctatggtcgtgaccgccgcgagcgaggccca
cgcgatgcgcaggctcaagccggcgacgacaccatagccgactcgaccgtgccgacagcg
gaagcaacaccagccaacgttggtgaaacaccgcaagaagaagcgccagttcgcagcagc
tacttctccctgccggtggaaacagcacctaccgctgtcgcagcgatcgcggctgtagat
gttgccccggaacaagtggctgaagtggtcgaacccgtgcgtgcgccacaagctgatgtg
gttgcagcgccggctgaagcacccaaaccgcggccacagccgtcaatggctgcttcggct
gtggaggaaaccaccaagggtttgcccaaggtcgccgcatacgtgctgccgatggacgca
atgagcgaagtggctcgggccagcggactggaatgggtgaactcggatgttgaacgcgtc
gcactggctcaagcggctatcgctgccgaacccaagccgatacacgtgccacgggaaatc
aaacctgtggaactggtcgacgaaggcccactggttctggtcgagacccgcaaagatctg
aacaaagtcaccttgcctttcgaaggcacatcagccacataa
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