Hydrogenophaga crassostreae: LPB072_17145
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Entry
LPB072_17145 CDS
T04505
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hyl
Hydrogenophaga crassostreae
Pathway
hyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB072_17145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyl03019
]
LPB072_17145
03016 Transfer RNA biogenesis [BR:
hyl03016
]
LPB072_17145
Enzymes [BR:
hyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LPB072_17145
Messenger RNA biogenesis [BR:
hyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LPB072_17145
Transfer RNA biogenesis [BR:
hyl03016
]
Prokaryotic type
tRNA degradation factors
LPB072_17145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KH-I_KHDC4-BBP
DUF5813
S1_RRP5
OB_RRP5_4th
DNA_pol3_a_NI
Motif
Other DBs
NCBI-ProteinID:
AOW15751
UniProt:
A0A167IYI5
LinkDB
All DBs
Position
complement(3733988..3736117)
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AA seq
709 aa
AA seq
DB search
MSMFNKVTKTFQWGPHTVTMETGEIARQASGAVLVNIDDTVVLATVVAKTEAKAGQDFFP
LTVDYTEKTYAAGKIPGSFFKREGRPSELETLTCRLIDRPIRPLFPEGFYNEVQVIVHVV
SLNPEVQADIAALIATSAALSISGIPFNGPIGAARVGYVNGEYVLNPGQTQLKDSQLDLV
VAGTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNIAIAAINELVRDAGKPAWDWQPPAK
DEPLIAKLDGLAKAKLEAAYQIRNKQARTQACRSAYAEVMAALKAEGDAFDSVAVEALLF
EIEAKIVRGQILAGEPRIDGRDTRTVRAIEIRNSVLPRTHGSSLFTRGETQALVVATLGT
DRDAQRIDALAGEFEDRFMLHYNMPPFATGEAGRFGTPKRREIGHGRLAKRALIAALPSK
EDFPYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKDGNRFAVL
TDILGDEDHLGDMDFKVAGTTNGISALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKTEVSNFAPKLFTMKINPEKIRDVIGKGGSVIRALTEETGCQINIDEDGTITIA
ATEASKAEEAKRRIEQITAEVEIGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHER
VEKVTDYLTEGQIIKVKVLETDEKGRVKLSMKALIDRNSAEQAPQQPQD
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgttcaataaagtcaccaaaaccttccaatggggcccgcacacggtcacgatg
gaaaccggcgaaatcgcccgtcaagcctccggcgctgtgctggtgaacatcgatgacacc
gtggtgctggccaccgtggtcgccaagaccgaagccaaggccggtcaagactttttcccc
ctgaccgtggactacacggaaaagacctacgccgccggcaaaatccccggcagcttcttc
aagcgcgaaggccgccccagcgaactcgaaacgctgacctgccgcctgatcgaccgcccg
atccgcccgctgtttcctgaaggcttctacaacgaagttcaggtgatcgtgcacgtggtg
agcttgaaccctgaagtgcaggccgacattgccgccctgatcgccacctccgcagccctg
tccatcagcggcatcccgttcaacggccccatcggcgctgcgcgcgtgggctatgtgaat
ggcgaatacgtgttgaaccctggccagacccagctcaaagacagccagctcgacctggtg
gtggccggtaccgaagccgccgtgttgatggtggaatccgaagcccagcagttgagcgaa
gaaatcatgctcggcgccgtggtgttcggtcacgagcaaggcaacatcgccatcgctgcg
atcaacgaactcgtgcgcgacgcgggcaaacccgcctgggactggcagcctcctgccaag
gacgagccgctgatcgccaagctcgacggcctggccaaagccaagctggaagccgcttac
cagatccgcaacaaacaagcgcgcacgcaagcttgccgttcggcttacgccgaagtcatg
gccgccttgaaagccgaaggcgacgcgttcgacagcgtggccgttgaagccctgttgttt
gaaatcgaagccaagattgttcgcgggcagattctggccggtgagccccgcatcgacggc
cgcgacacgcgcaccgtgcgcgccattgaaattcgcaacagcgtcttgccgcgcacccac
ggctccagcctgttcacccgcggtgaaacccaggcgctggtggtggccacgctcggtacc
gaccgcgatgcacagcgcatcgacgcgctggccggcgagttcgaagaccgcttcatgctg
cactacaacatgcctcccttcgccaccggcgaagctggccgctttggtacgcccaagcgc
cgcgaaatcggtcacggccgtctggccaagcgtgcactgatcgcagcactgcccagcaag
gaagatttcccttacaccatgcgcgtggtgtcggaaatcaccgaatccaacggttcgtct
tcgatggcttccgtttgcggtggctgcctggctttgatggacgccggtgtgccgatgaaa
gcccacgtggccggtatcgccatgggcctgatcaaggatggcaaccgatttgccgtgttg
accgacatcctgggtgacgaagatcacctcggcgatatggacttcaaagtcgccggtacc
accaacggtatctccgcactgcagatggacatcaagatccagggcatcaccaaagagatc
atgcaggttgcactggcccaggccaaagaagcccgcatgcacattctgggcaagatgcag
gaagccatgggcgaagccaagaccgaagtgtcgaacttcgcgcccaagctgttcacgatg
aagatcaaccccgagaagatccgtgatgtgatcggcaagggcggttccgtgatccgtgcg
ctgaccgaagagactggctgccagatcaacatcgacgaagacggcacgatcaccatcgcc
gcgaccgaagccagcaaggccgaagaagccaagcgccgcatcgagcagatcaccgccgaa
gtcgaaatcggcaaggtctacgaaggcccgatcaccaagatcctggacttcggcgcattg
gtcaacctcttgcctggcaaagacggtctgctgcacatcagccagatcgcccacgagcgc
gtcgagaaggttaccgactacctgaccgaaggccagatcatcaaggtcaaggtcttggag
acggatgaaaaaggccgcgtcaagctgtccatgaaggctttgatcgaccgcaacagcgcc
gagcaagcgcctcagcagccccaagactga
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