Hydrogenophaga crassostreae: LPB072_20850
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Entry
LPB072_20850 CDS
T04505
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hyl
Hydrogenophaga crassostreae
Brite
KEGG Orthology (KO) [BR:
hyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hyl03016
]
LPB072_20850
Enzymes [BR:
hyl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPB072_20850
Transfer RNA biogenesis [BR:
hyl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LPB072_20850
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Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AOW14903
UniProt:
A0A167HMW2
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All DBs
Position
4495025..4497088
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AA seq
687 aa
AA seq
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MHILFDDAGKLMTGRLMSETESSLQVELDSGKRVKVKSANAFLRFEKPAPAELMPAAAAL
AESMELELAYEFAPEEDFGFLDIAHDYFSDSATTTEQVAALICLQGAPHYFRRAGKGRYK
KAPPEILAQALAAIEKKKQVQAQIEVWAAELVAGNCPEPVREQLYKILFKPDKNAPEYKA
VVEASRNSHSAPLALLEKAGAISSAYQFHWQRFLFDQFPKGTGFPALEAPAIADELPLAP
VQAFSIDDSQTTEIDDALSVQGLGSGTVTLGIHIAAPGLAIAPDGAIDQVARNRLSTVYM
PGHKITMLPDEVVQTYTLMAGRDCPAVSLYVTFDEATLAVTDSRTALERVPIAHNLRHDQ
LDQVITEAWLGGDATSNEVPADIAALQPSLVFLFQLAKHLKAQREVVRGKPETFNRPDYN
FRLEGMTGDEPDGSETVRISTRQRGAPLDLMVAEAMILANSTWGQWLAACGVPGIYRSQA
SLAPGVKVRMGTKAAPHAGIGVPAYAWSTSPLRRYVDLVNQWQIIACARNGATAALVAPF
KPKDANLFAVISAFDAAYSAYNGFQNGMERYWTLKHLEQAGISELTATLFKDNLVRADGL
PLVLPVMGVEGLPRGAHVRVRLGAVDEITLDISGTLIERLDLPVDESPDEADSDGDGDDD
GITSPLALAIDINESPDNEPAAPAQTG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgcatattttgttcgacgacgccggcaagctcatgaccggtcgcctcatgtccgaaacc
gagagctcactccaggtggagctggattccggcaagcgggtcaaagtcaaaagcgccaat
gcgtttttgcggtttgaaaagccagcaccggccgagctcatgcccgccgcagcggccctg
gccgagtccatggagcttgaactggcctatgagttcgcccctgaagaagacttcggtttt
ctcgacatcgcccacgattacttcagcgattcagccaccaccaccgagcaggtcgcggcc
ctgatatgcctgcaaggcgccccccattatttccgccgggccggaaagggccgctacaaa
aaagcgcctcccgagatccttgcccaggcgctggctgccatcgaaaagaagaagcaggtt
caggctcaaatcgaagtgtgggccgccgagctggtcgcaggcaactgcccagagcctgtc
cgtgagcagttgtacaagattctgttcaagccggacaaaaacgcacccgaatacaaagcc
gtggttgaggcctcgcgcaacagccacagcgcgccactggcgctgctggaaaaggcaggc
gccatttccagcgcttaccagttccactggcagcgttttctgttcgatcagttccccaaa
ggcaccggcttccccgcattggaagcccccgccattgccgatgaactgccgctggcgccc
gtgcaggcattttccatcgacgattcacaaaccaccgaaattgacgacgcgctgtcggtg
cagggtctgggcagcggcaccgtcacactgggtatccacattgcggccccgggcttggcc
atcgcgccagacggcgccatcgaccaggtggcccgcaaccgcttgtccaccgtctacatg
ccgggccacaagatcaccatgctgcccgacgaggtggtgcagacctacaccctgatggcc
gggcgcgactgccccgccgtctcgctctatgtcaccttcgacgaagccacgctggctgtg
accgactcgcgtactgcgctggagcgcgtgcccatcgcccacaacctgcgccacgaccag
ctcgatcaggtcatcaccgaagcctggctgggcggtgacgccacctcgaacgaggtgccc
gccgacattgccgcgctgcagccttcgctggtgtttttgttccagctggccaaacacttg
aaggcccagcgcgaagtggtccgcggcaagcccgagaccttcaaccgtccggattacaac
ttccgcctcgaaggcatgaccggcgatgagcccgacggcagtgaaacagtgcgcatatcc
accaggcaacgcggcgcaccgctggatttgatggtggccgaggccatgatcctggccaac
agcacctggggccaatggctggctgcatgtggtgtgcccggcatctaccgaagccaggcc
agtctggcgcccggcgtcaaggtgcgcatgggcaccaaagccgcgccgcatgccggcatc
ggtgtgccggcctatgcctggagcacctcgcctctgcgccgctatgtcgacctggtcaat
caatggcagatcatcgcctgcgcgcgcaatggcgcgaccgcagccctggtggcaccgttc
aaacccaaagacgcgaacctgttcgccgtcatcagcgccttcgatgccgcctactccgcc
tacaacggttttcagaacggcatggagcgctactggacgctcaaacacctggagcaggca
ggcatctccgagctcaccgccacgctctttaaagacaacctggtgcgcgccgacggcttg
ccactggtcttgccggtcatgggcgtggaaggactgccgcgcggggcccatgtgcgcgtg
cgcctgggcgccgtcgatgagatcaccctggatatctccggcaccttgatcgaacggctc
gatctccccgtcgacgaatcgcctgacgaggccgattcggacggcgatggcgacgacgat
ggcatcaccagcccattggcgctggccatcgacatcaacgagtcaccagacaacgaaccc
gccgcccccgcccagactgggtga
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