Hydrogenophaga crassostreae: LPB072_21255
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Entry
LPB072_21255 CDS
T04505
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hyl
Hydrogenophaga crassostreae
Brite
KEGG Orthology (KO) [BR:
hyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hyl03016
]
LPB072_21255
Enzymes [BR:
hyl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPB072_21255
Transfer RNA biogenesis [BR:
hyl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LPB072_21255
BRITE hierarchy
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GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
S1
Motif
Other DBs
NCBI-ProteinID:
AOW14970
UniProt:
A0A162SXJ3
LinkDB
All DBs
Position
complement(4589234..4590706)
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AA seq
490 aa
AA seq
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MNHALINHRTNLSTLAAWAMFSRGLEPEFPVAALEQLASFKGAATGSGGGIRDLTDRDWC
SIDNDDSRDLDQLSLSEPMPRGGLRVFVAVADVDALVKKGTPIDQHAQLNTTSVYTSARI
FPMLPERLSTDLTSLNQGEDRLAIVSEMAFTDDGVLVESTIYRALVHNKAQLAYDAVSDW
IDGKGELPEAARAVHGLDTQLRAQDGLAQKLRVLRRAEGSLEFETFQPRAQFDGERIIDI
RQQVQNRARQLIEELMIATNGCTARYLASNGGLALRRVVRSPERWLRIVDVAKAYGVKLP
NQPDGKALEAFLARQHREDPLRFPDLSLVIVKLMGSGEYVVERSDETPIGHFGLAVQDYM
HSTAPNRRFPDLITQRLVKAALAGVKTPYSPAELVDIATHCTAQEDASRKVERQMRKSEA
ALLLHSRVGQRFAGLVTGVSDHGVWVRIFEPPVEGRLTGDLPELRVGRSVRVRLVSTSVE
RGFIDFALEH
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatgcgttgatcaaccaccgaaccaacctttcgaccctggccgcatgggccatg
ttcagccgggggctggagccggaattccctgtggcggcactcgagcaattggcctccttc
aagggcgcggccacagggtctggtggaggcattcgtgatctcaccgatcgggactggtgt
tcaatcgacaacgatgactcacgcgatctggatcagctctcgctgagcgagccgatgcca
aggggtgggttgcgggtttttgtggccgtggccgatgtggacgcgctggtgaaaaagggc
acgccgatcgatcagcatgcgcaactcaacaccacctcggtctatacctcggcgcgcatc
ttccccatgctgcccgaacggctttcgaccgatctgacctcgctgaaccagggtgaggat
cgactggcgatcgtgagtgaaatggcgttcactgacgatggcgtgctggtggagtcgacc
atttaccgggccttggtgcacaacaaggcgcaactggcctacgacgcggtatcggactgg
atcgatggcaagggtgagctgcccgaggcggcacgggcggttcatggtctggacacccag
ttgcgagcgcaagatggcttggcgcagaagctccgggtgctgaggcgggccgaaggatcg
ctggagttcgagaccttccagcccagagcgcagtttgacggtgagcgcatcatcgacatt
cgccaacaagtgcaaaaccgggcgcgccagttgatcgaagaattgatgattgccaccaat
ggctgcacggcacggtacctcgccagcaatgggggcctcgcgctcaggcgggtggtgcgc
tcgcccgaacgctggctgcgcatcgtggacgtggccaaagcctatggcgtgaagctgccc
aaccagccagacggcaaagcccttgaggcttttttggccagacaacaccgggaagacccg
ctgcgctttccagatctttccttggtcatcgtgaagctgatggggtctggagagtacgtg
gtcgaacgctcagatgaaacgcccattgggcattttggcctggccgttcaagactacatg
cactccaccgcgcccaaccgccgcttccccgatctgatcacgcagcggttggtgaaggcc
gcgctcgctggcgtcaaaacaccgtattccccagcggagctggtggatatcgccacccat
tgcactgcccaggaagatgcctcgcggaaggtggagcggcagatgcgcaagtcggaagcg
gctttgctgctgcattcgcgcgttggccagcgtttcgccggcctggtcaccggtgtgagc
gatcacggcgtctgggtgcggatctttgaaccaccggtcgagggccggctgaccggtgat
ttgcctgagttgagggtgggcaggtccgtgcgcgtgagactggtgtcgacttcagtagag
cgtggctttatcgattttgcgctggagcactga
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