KEGG   Hymenobacter sp. APR13: N008_00190
Entry
N008_00190        CDS       T03213                                 
Name
(GenBank) signal recognition particle
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
hym  Hymenobacter sp. APR13
Pathway
hym02024  Quorum sensing
hym03060  Protein export
hym03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:hym00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    N008_00190
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    N008_00190
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    N008_00190
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:hym02044]
    N008_00190
Enzymes [BR:hym01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     N008_00190
Secretion system [BR:hym02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   N008_00190
  Eukaryotic Sec-SRP protein
   N008_00190
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N AAA_22 CbiA Zeta_toxin AAA_16 nSTAND3 AAA_17 cobW CLP1_P ParA ATPase APS_kinase KAP_NTPase KTI12 AAA_30 NTPase_1 AAA_31 DO-GTPase1 ATP_bind_1 AAA_33 AAA_14 AAA Helicase_RecD AAA_18 ArsA_ATPase NPHP3_N ResIII PIF1 AAA_5 SLFN-g3_helicase NACHT AAA_24 MMR_HSR1 Pox_A32 TsaE YqeC Thymidylate_kin MobB AAA_28 AAA_19
Other DBs
NCBI-ProteinID: AII50401
LinkDB
Position
complement(49622..50971)
AA seq 449 aa
MFDNLSTKLDKAFKTLKGQGSITEINVAATVKEIRRALVDADVNYKVAKEVTDKIKDEAM
GRDVLISVSPGQLMTKIVYDELTQLMGGEKQDIVIKGEPAVVLLSGLQGSGKTTFAGKLA
AYLKKQNRTVLLVACDVYRPAAIDQLKVLGTQVDVEVYSEPENKNPVEISRNAIEYARKN
NKKVVIIDTAGRLAVDEQMMSEIEAVKRAINPSETLFVVDSMTGQDAVNTAKTFNDRLNF
DGVVLTKLDGDSRGGAALSIRAVVEKPIKFISTGEKMEALDMFYPDRMAQRILGMGDVIS
LVERAQQQFDEDEAKRINQKIRKNQFNFDDFLSQLEQIKKMGNLKDLVGMIPGMSKAIKD
VDIDDDAFKPIEAIIQSMTPMERAQPELLNGSRRRRLAKGSGTDIQQVNNLMKQFEDMRK
MMRTMNKMSQTKGGMQQMARMMGMKGPLR
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgttcgataacctcagtaccaagctcgataaagcctttaaaaccctcaagggccagggc
agcatcaccgaaattaacgtcgccgcgaccgttaaggaaatccgccgcgccctcgtcgat
gccgacgtcaactacaaggtagccaaggaagtaaccgacaagatcaaggacgaggccatg
ggccgcgacgtgctcatcagcgtgtcgccaggccagctcatgaccaagatcgtctacgat
gagctcacccagctcatgggcggcgaaaagcaggatatcgtcatcaaaggcgagccggct
gtggtgttgctgtcgggtctgcagggctcgggcaaaaccacgtttgccggtaagctggcc
gcttacctcaagaagcagaaccgcacggtgctgctcgtggcctgcgacgtgtaccgtccc
gccgccatcgatcagctgaaagtgctgggcacgcaggtggatgtggaggtgtactcggag
cccgagaacaagaacccggtggagatttcgcgcaacgccattgagtacgctcgcaaaaac
aacaaaaaggtcgtcatcatcgacaccgccggccgcctggccgtggacgagcagatgatg
agcgagattgaggccgtgaagcgcgccatcaatccgtcggaaacgctgttcgtggtggac
tccatgaccggccaggacgccgtgaacaccgccaaaaccttcaacgaccggctgaatttc
gacggcgtggtgctcaccaagctcgacggcgactcgcgcggtggcgcggccctgagcatc
cgtgctgtagtagaaaagcccatcaagttcatctcgacgggtgagaagatggaggccctg
gacatgttctatcccgaccggatggcgcagcggatcctgggcatgggcgacgttatcagc
ctggtagagcgtgcccagcagcagttcgacgaggacgaggccaagcgcatcaaccagaag
atccgcaaaaaccaattcaacttcgacgacttcctctcccagctggagcagatcaagaag
atgggcaacctgaaggatctggtgggcatgattcccggcatgagcaaggccatcaaggac
gtggacatcgacgacgatgccttcaagccgattgaggccatcatccagagcatgacgccg
atggagcgcgcccagcccgagctgctgaacggctcgcgccgccgccgcctcgccaaaggc
tccggcaccgacatccagcaggtaaataacctgatgaagcagttcgaggacatgcgcaaa
atgatgcgcaccatgaacaagatgagccagaccaaaggcggcatgcagcagatggcccgc
atgatgggcatgaaaggcccgctccgctaa

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