Hymenobacter sp. APR13: N008_01745
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Entry
N008_01745 CDS
T03213
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hym
Hymenobacter sp. APR13
Pathway
hym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N008_01745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hym03019
]
N008_01745
03400 DNA repair and recombination proteins [BR:
hym03400
]
N008_01745
Enzymes [BR:
hym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N008_01745
Messenger RNA biogenesis [BR:
hym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N008_01745
DNA repair and recombination proteins [BR:
hym03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N008_01745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
GntR
PF0610-like_N
Tugs
Motif
Other DBs
NCBI-ProteinID:
AII50707
LinkDB
All DBs
Position
complement(413273..415195)
Genome browser
AA seq
640 aa
AA seq
DB search
MLEHATDDILHVLRQHWGHAAFRPLQEDIIRSVLAGQDTLALLPTGGGKSICFQVPALAR
PGLCVVVSPLIALMKDQVENLRKRGIKAEAVFSGMSHQEIDQTLDNCVYGPVKFLYVSPE
RLQTDMFRARVGRMKVSLLAIDEAHCLSQWGYDFRPPYLQIAALRELLPGVPCIALTATA
TEQVKLDIVEKLLFRPGQRVFQQSFARPNLSYSALATEDKLRRLLEVVRGVGAGKTSIVY
ARTRRQTEDTAAYLQQQGVRAAAYHAGLPSDQRTRTQQDWMQNRIHCIVATNAFGMGIDK
PDVRLVVHLEAPDNLEAYYQEAGRAGRDEKYAFAVLLQGPNDAAELRRRTQQGYPPLDTV
RRVYQALANFSRTAVGGGELVAFDFDIQHFAETYRIKALDAHNSLRTLAREGFVQLNEAV
NTPARVHIPIDHQDLYRFQVANAQHDQLIKSLLRFNGGELFSGFQRISENSLAQHLKLSV
VDVRKTLVFLHRSGIIQYQPRQESPQALFTTPRFDADKLPLDQKRLTQARDLALHKTEAV
VRYAAGGRCRQQLLLEYFGELDAPPCRVCDFCLAEKKARQTPAPSADLRQQLLTLLKATP
QTPRDLLKHFAPGQATAVTEQLRELVELGELAYAPDGRLG
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcacgccaccgacgatattctgcacgtactgcgccagcactggggccatgcg
gcgttccggccgctgcaggaagatattatccggtcggtgctggcggggcaggatacgctg
gcgctgctgcccactggcggcggcaaaagtatctgctttcaggtgccggccctggcccgg
ccggggctgtgcgtggtggtgtcgccgctgattgcgctgatgaaggaccaggtggaaaac
ctgcgcaagcgcggcatcaaggccgaggccgtgttttcgggcatgagccaccaggaaatc
gaccagaccctggacaactgcgtgtacgggccggtgaagtttctgtacgtgagtcccgag
cggctgcagaccgacatgttccgggcccgggtgggccgcatgaaggtgagtctgctggcc
atcgacgaggcccactgcctctcgcagtggggctacgatttccggccgccgtacctgcag
attgcggcgctgcgggagctgctgcccggcgtgccgtgcattgccctcacggccacggcc
accgagcaggtgaagctggacatcgtggaaaagctgctgtttcggcccggccaacgcgtg
tttcagcagagctttgcccggcccaacctgtcgtattcggcgctggccaccgaggacaag
ctgcgccggctgctggaagtggtgcggggcgtgggggccggcaaaaccagcatcgtgtac
gcccgcacccgccgccagactgaggacactgctgcttatttgcagcagcagggcgtgcgc
gccgccgcctaccacgccggcctgcccagtgaccagcgcacccgcacccagcaggactgg
atgcagaaccgcatccactgcatcgtagctaccaacgccttcggcatgggcatcgacaag
cccgacgtgcggctggtggtgcacctggaagcgcccgacaacctggaggcctactaccag
gaagccggccgcgccggccgcgacgagaaatacgcctttgccgtgctgctgcagggaccc
aacgatgccgccgagctgcgccgccgcacccagcagggctacccgccgctggacactgtg
cgccgggtgtaccaagcgctggccaacttctcgcgcacggccgtgggcggtggcgagctg
gtggccttcgacttcgacattcagcacttcgccgaaacctaccgcatcaaggccctcgac
gcccacaacagcctgcgcaccctggcccgcgaagggtttgtgcagttgaacgaggccgtg
aacacgccggcccgggtgcacatccccatcgaccaccaggacctgtaccggttccaggtg
gccaacgcccagcacgaccagctcatcaaaagcctgctgcgcttcaatggcggggaactg
ttcagcgggtttcagcggatttcggaaaatagcctggcgcagcacctcaagctgagcgtg
gtggacgtgcgcaaaacgctggtgttcctgcaccgctcgggcatcatccagtaccagccg
cggcaggagtcgccgcaggcgctgttcaccacgccgcgcttcgatgccgacaagctgccg
ctggaccagaagcgcctgacgcaggcccgcgacctggccctgcacaaaaccgaggccgtg
gtgcgctacgccgccgggggccgctgccgccagcagctgctgctggagtatttcggcgag
ctggacgcgccgccctgccgcgtctgcgacttctgcctggccgagaagaaagcccgccaa
acgcccgccccgtccgccgacctgcgccagcagttgctcacgctgctcaaagccacgccc
caaacgccccgcgacctgctaaagcacttcgcgcccggccaggccacggccgtcacggag
cagctgcgggagctggtggagctgggcgagctggcgtacgcgccggatgggcggctgggg
tag
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