Hymenobacter sp. APR13: N008_08190
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Entry
N008_08190 CDS
T03213
Name
(GenBank) hypothetical protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hym
Hymenobacter sp. APR13
Pathway
hym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N008_08190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hym03019
]
N008_08190
03016 Transfer RNA biogenesis [BR:
hym03016
]
N008_08190
Enzymes [BR:
hym01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
N008_08190
Messenger RNA biogenesis [BR:
hym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N008_08190
Transfer RNA biogenesis [BR:
hym03016
]
Prokaryotic type
tRNA degradation factors
N008_08190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AII51957
LinkDB
All DBs
Position
complement(1918450..1920948)
Genome browser
AA seq
832 aa
AA seq
DB search
MKRKDDSAAPRANRAKAAPGSPDAALISQDLVFRIFRDNPEKVLAYRQISRRLGVTTREQ
RDEVFSHLKALKKAGLLTLVQNDEYRLTDPANAPAAVDAGSGRSSRKNEAVPARRSARSP
EAEFGQDPVVHRRREAGFDFPDAASTTDSRRRHASHADTIVGTVALATDKFAFVISEESE
SDVRVFTDRLRFAMQGDTVRLRLRGSRDGRPVGDVVEVLKRVRPEVVGRLQVRGGIGFVK
PDNRKMYFDVFVPFENLHGAVDGEKVLVRVTEFPEDDAGRSPLGEVVRSFGQAGANEAEI
NAIMAEFGLPFEFPAEVEEESESISEIIPASEVERRRDFRHITTFTIDPADAKDFDDALS
IQKLDNGHWEIGVHIADVTHYVRPGTALEEEAKHRATSVYLVDRVIPMLPERLSNGLCSL
RPNEDKLTFSAVFELDENGKLYESWFGKTIIHSDRRFAYEDAQERIEGLESDYTAEVQLM
NSIAKKLCAQRFKQGAISFETQEVKFKLDENGKPLGVYVKERKDAHKMIEEFMLLANRKV
AEFVFKLKARKPRFTMVYRVHEAPDPDRLQTFALFAKKFGHHLDLANPKKISTELNDLSM
EVMGRPEQNVLQTLAVRTMSKAIYTTEPLGHFGLAFEHYSHFTSPIRRYPDMMAHRLLEH
YLEGGKNVDVEPVEEECKHSSEREKVAASAERASIKYKQVEFMSEVIGETFTGVVSGLTE
RGMYVEIEENKCEGMVRLSEIPGDHFELDRDNYRIVGQRTKRIIQFGDELQVIVKSANLL
DRTIDFELVDNRPDAVKQRELQERRENSKPRGYRPERSSGGRPGGDKGKRRR
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaaaagacgactccgccgccccccgcgccaaccgcgcgaaggcagcccccggc
agccctgatgctgccctcatttcccaggacctggtcttccgcatcttccgcgacaacccc
gagaaggtgctggcctaccgccagatttcccgccgcctgggcgtcaccacccgcgagcag
cgcgacgaagtattcagccacctcaaggcgctgaagaaagccggcctgctgacgctggtg
cagaacgacgaataccgcctcaccgacccagccaacgcgcccgccgctgtggacgcgggc
agtggccgcagctcgcgcaaaaacgaggcggtccccgcccgccgcagtgcccgctcgccc
gaggccgagttcggccaggaccccgtggtgcaccgccgccgcgaggccggcttcgacttc
cctgacgcagccagcaccaccgattcgcgccgccgccacgcctcccacgccgacaccatt
gtgggcaccgtggcgctggccaccgacaagtttgccttcgtgatttccgaggaaagtgaa
agcgacgtgcgcgtgttcacggaccgcctgcgctttgccatgcagggcgacacggtgcgc
ctgcgcctgcgcggctcccgcgacggccgccccgtcggcgacgtggtggaagtgctcaag
cgggtgcgccccgaggtggtgggccgcctgcaggtgcgcggcggcatcggcttcgtgaag
cccgacaaccgcaagatgtacttcgacgtgttcgtgcccttcgagaacctgcacggcgcc
gtggatggcgagaaggtgctggtgcgcgtcacggagtttccggaggatgacgctggccgc
tcgccgctgggcgaggtggtgcgcagcttcggccaggccggcgccaatgaggccgagata
aacgccatcatggctgagttcggcttgccgtttgaattcccggccgaagtggaggaggag
tcggagtcgatttccgaaatcatcccggcttcggaagtggagcgccgccgcgacttccgc
cacatcaccaccttcaccatcgaccccgccgacgccaaggacttcgacgatgccctgagc
attcagaagctcgacaacggccactgggaaatcggcgtgcacatcgccgacgtgacccac
tacgtgcgccccggcacggcgctggaagaggaagccaagcaccgcgccacctcggtgtac
ctcgtcgaccgcgtgattccgatgctgccggagcgcctctccaacggcctctgctcgctg
cgccccaacgaggacaaactgactttctcggccgtgtttgagctcgacgaaaacggcaag
ctctacgagtcgtggttcggcaaaaccatcattcactccgaccgccgcttcgcttacgaa
gatgcccaggaacgcatcgaaggactggagtcggactacacggccgaggtgcagctcatg
aacagcatcgccaagaagctgtgcgcgcaacgcttcaagcagggcgccatcagcttcgag
acgcaggaagtgaagttcaagctcgacgagaacggcaagccgctgggcgtgtatgtgaag
gagcgcaaggacgcgcacaagatgatcgaggagttcatgctgctggccaaccgcaaggtg
gccgagttcgtgttcaagctcaaggcccgcaagccgcgcttcacgatggtgtaccgcgtg
cacgaagcccccgacccggaccgcctgcagaccttcgcgctgttcgccaagaaatttggc
caccacctcgacctggccaaccccaaaaagatcagcaccgagcttaacgacctttcgatg
gaggtgatgggccggcccgagcagaacgtgctgcagaccctggctgtgcgcaccatgagc
aaggccatctataccaccgagccgctgggccactttggcctggccttcgagcactactcg
cacttcacctcgcccatccgtcgctaccccgacatgatggcccaccgcctgctggagcac
tacctggagggcggcaagaacgtggacgtggagcctgtggaagaagagtgcaagcactcc
tcagagcgcgagaaagtggcggcctccgccgagcgcgccagcatcaagtacaagcaggtg
gagttcatgtccgaggttatcggcgagacgttcaccggcgtggtgtcgggcctcacggag
cgcggcatgtacgtggaaatcgaggagaacaagtgcgaaggcatggtgcgcctgagcgag
attcccggcgaccatttcgagctggaccgcgacaactaccgcatcgtgggccagcgcacc
aagcgcattatccagttcggcgacgagctgcaggttatcgtgaaatcggccaacctgctc
gaccgcaccatcgacttcgagctggtggacaaccgccccgacgccgtgaagcagcgcgag
ctgcaggagcgtcgcgagaacagcaagccccgcggctaccgccccgagcgcagcagcggc
ggccggcccggcggcgacaaaggcaagcgccgccggtag
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