Hymenobacter sp. APR13: N008_13355
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Entry
N008_13355 CDS
T03213
Name
(GenBank) hypothetical protein
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hym
Hymenobacter sp. APR13
Pathway
hym03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
N008_13355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hym03400
]
N008_13355
Enzymes [BR:
hym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N008_13355
DNA repair and recombination proteins [BR:
hym03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
N008_13355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
ResIII
Helicase_C
Zn_ribbon_PriA
PriA_C
nSTAND3
UPF1_Zn_bind
AAA_30
TsaE
nSTAND6
zf-HYPF
Zn_ribbon_6
Zeta_toxin
AAA_16
AAA_22
AAA_11
HypA
Motif
Other DBs
NCBI-ProteinID:
AII52958
LinkDB
All DBs
Position
complement(3129341..3131890)
Genome browser
AA seq
849 aa
AA seq
DB search
MSLTFDFVQPQPEPAADRVTLFADVILPLPLPKLYTYRVPFELNDQVVIGGRVIVQFGAK
RTLSCIVAAVHETPPKDYQAKYILEFIDETPVVTQPQLKLFRWMADYYLCTLGEVINAAL
PAALKLNSESRVQLHPVWLNTDEADRYPLSEQEQKVVAALLDGEEGKSMTFTEVGDVLGI
ASFHKVIKSLMHKETIFLFEHLADKYSPKVVKKVRLAHHYVAEAALEGLFAQLASRAKQL
DVLMRYLQKVPVYQNEHANHNGIEKAYLSSAPHLSPSAVNTLIKNGVLEQFDVIVSRFPL
DDATEANMHFRLSETQQAAHDDILDQFNTKDIVLLHGVTGAGKTEIYIELIRQALDGGGQ
VLYLLPEIALTAQIVTRLMRVFGSRLGVYHSKFSDNERVEVWNGVLSGRFQVVVGVRSSV
FLPFDNLALLIVDEEHESSYKQYDPAPRYNAREVALMMANFQGAKTLLGSATPSVETYYQ
TRTGRYGLVSLTKRYGEAGLPEIELVDTRKAREAKTLLNHFTPELMAEMESKLAQKEQVI
LFQNRRGYAPFINCLDCGWIPKCTNCAVSLSYHKQAHELRCHYCGHHDRMPVQCPACGSR
NIKTVGFGTEKIEDDLKVMLPQANVQRMDLDTTRAKNSYQQIISDFEQQATNVLVGTQMV
TKGLDFANVSLVGIINADSIIHYPDFRAHERAFQMFVQVSGRAGRKGKKGKVIIQTADPQ
QVIFDKVIRNDYLEFYEYEILQRREHGYPPFMRIIRLTVKHMDQLLCERAAILLTGELVE
RLGREAVLGPEAPYIFRIRNFYLQEITIKLSREHTVLRAAKADILDAINLIRDQKDYKQA
RFVADVDPM
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
ttgagccttacgttcgactttgttcagccgcagccggagccggccgccgaccgggttacg
ctcttcgccgacgtgattctgccgctgccgctgcccaagctctatacctaccgcgtgccc
ttcgagctgaacgaccaggtcgtgattggcgggcgcgtgattgtgcagtttggggccaag
cgcaccctgagctgcattgtggcggccgtgcacgaaacgccgcccaaagactaccaggcc
aagtacatcctggagttcatcgacgaaacacctgtcgtgacccagccgcagctcaagctg
ttccgctggatggccgactactacctctgcaccctgggcgaggtgataaacgccgcgctg
ccggccgccctcaagctcaactccgagagccgcgtgcagctgcatccggtgtggctaaac
accgacgaggccgaccgctacccgctcagcgagcaggagcagaaagtagtggcagccctg
ctggacggcgaggaaggcaagtcgatgacgttcacggaagtgggcgacgtgctgggcatt
gcgtccttccataaggtcatcaagagtctgatgcacaaggaaaccatcttcctgttcgag
cacctggccgataaatactcgccgaaggtggtgaagaaggtgcggctggcccatcactac
gtggccgaggccgcgctggaaggcctgtttgcgcagctggccagccgcgccaagcagctc
gacgtgctgatgcgctacctgcagaaggtgcccgtgtaccagaacgagcacgccaaccac
aacggcatcgagaaggcctacttgtcgtcggcgccgcacctgtcgccgtcggcggtgaat
acgctcatcaaaaacggcgtgctggagcagtttgatgtgattgtgtcgcggtttcccttg
gacgatgccacggaggccaatatgcacttccgcctcagcgaaacccagcaggcggcccac
gacgacattctcgaccagttcaacaccaaggacattgtgctgctgcacggcgtgacgggc
gcgggcaagacggaaatctacatcgagctgatccggcaggcgctggacggcggcgggcag
gtgctgtacctgctgcccgaaattgccctcacggcccagattgtaacccgcctgatgcgc
gtgttcggctcgcggctgggcgtgtaccactccaagttctccgacaacgagcgggtggaa
gtgtggaacggcgtgctgtcgggccgcttccaggtggtggtgggcgtgcgctcctcggtg
tttctgcccttcgacaacctggcgctgctgattgtggatgaagagcacgaaagcagctac
aagcagtacgaccccgccccgcgctacaacgcccgcgaggtggctttgatgatggccaac
ttccagggcgccaaaaccctgctgggctcagccacgccgtcggtggaaacctactaccag
acccgcaccggccgctacggcctcgtgagcctcaccaagcgctacggcgaggccggcctg
cccgaaattgagctggtagacacccgcaaggcccgcgaagccaaaaccctgctcaaccac
ttcacgcccgagctgatggcggaaatggaaagcaagcttgcccagaaagagcaggtgatt
ctgttccagaaccgccgcggctacgcccctttcatcaactgcctggactgtggctggatt
ccgaagtgcaccaactgcgccgtgagcctcagctaccacaagcaggcccatgagctgcgc
tgtcactactgcggccaccatgaccggatgccggtgcagtgcccggcctgcggctcgcgc
aatatcaaaaccgtgggcttcggcaccgagaagattgaggacgacctgaaggtgatgctg
ccccaagccaacgtgcagcgcatggacctcgataccacccgcgccaaaaactcctaccag
cagatcatttccgacttcgagcagcaggccaccaacgtgctggtgggcacccagatggta
accaagggcctcgatttcgccaacgtgagcctggtaggcatcatcaacgccgacagcatc
attcactaccccgatttccgggcgcacgagcgggccttccagatgtttgtgcaggtgagc
gggcgcgcgggccgcaagggcaaaaaaggcaaggtcatcatccagaccgccgacccgcag
caggtgattttcgacaaggtgatccgcaacgactacctggagttctacgaatacgaaatc
ctgcagcggcgcgagcatggctacccgccgttcatgcgcattatccggctcacggtcaag
cacatggaccaactgctgtgcgagcgggccgccatcctgctcaccggcgagctggtggag
cgcctgggccgcgaggccgtgctgggccccgaagcgccctacatcttccgcatccgcaac
ttctacctgcaggaaatcaccatcaagctcagccgcgagcatacggtgctccgggccgcc
aaagccgacatcctggacgccatcaacctaatccgtgaccagaaggactacaagcaagcc
cgcttcgtggccgatgtggacccgatgtag
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