Hymenobacter sp. APR13: N008_14345
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Entry
N008_14345 CDS
T03213
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hym
Hymenobacter sp. APR13
Pathway
hym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N008_14345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hym03019
]
N008_14345
Enzymes [BR:
hym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N008_14345
Messenger RNA biogenesis [BR:
hym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N008_14345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AII53149
UniProt:
A0A076HZL4
LinkDB
All DBs
Position
complement(3379163..3380896)
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AA seq
577 aa
AA seq
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MTFHEFNLHDDLLAGIDAMNYQNATPIQEQAIPRILEGKDLIACAQTGTGKTAAYLLPLL
DKISHAKHGTTSTLVLVPTRELATQIDEQVTGFGYFVEASSIAIYGGGKSEGWEQQKRAL
TSGADIIIATPGRLIAHMQMGYVKFEDLKYLVLDEADKMMDMGFSDDILNIVRQLPKERQ
TLLFSATMPSKIRDFSQQLLKSPEEIRLAVSKPAAGIDQQFYMAFDRQKIYLLEHIIKTQ
DVQSMVLFTSQKAAVGGIVRAINKLGIEARGISSDRTQEEREEIMRAFKNKQFPILVATD
VLSRGIDIDSLSHVVNYDIPRAAEDYVHRIGRTARAATKGTAITFIADQDQDRVLKIEKL
IEREVEKQNITEGLGLGEAPEFDPKRFSGLRGKVGGRPERGPRSGGSGGGRDRSPRPEGG
SGGGRSGGGRDGVRPNRGDGKPDADQQARIAKAQAALAALDAGQAPAQPYQRPPREDRPE
GSDSRPRREPREPRAEGEARPPREPRAPRPEGEARPPREPRAPRTEGEAAAEPRAEGDKA
EGQRRRKRGGRNRSGRGPRPEGGAATSEASAPVRPGR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
ttgacgtttcacgagtttaacctgcacgatgacctgctcgcgggcatcgatgccatgaat
taccagaatgccacgcccatccaggagcaggccattcctcgcattctggaaggcaaagac
ctgattgcctgcgcccagaccggcaccggcaaaaccgccgcctacctgctgccgctcctc
gacaagatttcgcacgccaagcacggcaccacctccacgctggtgctggtgcccacccga
gagctggccacccagatcgacgagcaggtgaccggcttcggttacttcgtggaagccagc
tccattgccatctacggcgggggcaaatccgaaggttgggagcagcagaagcgcgccctc
acctccggcgccgacatcatcattgccacgcccggccgcctcattgcccacatgcagatg
ggctacgtgaagttcgaggacctgaagtatctggtgctcgacgaggccgacaagatgatg
gacatgggcttctccgatgacatcctcaacatcgtgcgccagttgcccaaggagcgccag
acgctgctgttctcggccaccatgcccagcaaaatccgcgacttttcgcagcagctgctc
aaaagccccgaggaaatccggctggccgtttccaagcccgccgccggcatcgaccagcag
ttctacatggccttcgaccgccagaagatttacctgctcgagcacatcatcaaaacccag
gacgtgcagagcatggtgctgttcaccagccagaaagcggccgtgggcggcatcgtgcgg
gccatcaacaagctgggcatcgaggcccggggcattagctccgaccgcacccaggaggag
cgcgaggaaatcatgcgcgccttcaagaacaagcagttccccatcctcgtcgccaccgac
gtgctgagccggggcattgacatcgactcgctgagccacgtggtgaactacgacatcccg
cgcgccgccgaggactacgtgcaccgcatcgggcgcacggcccgcgccgccaccaaaggc
acggccatcaccttcattgccgaccaggaccaggaccgcgtgctcaaaatcgagaaattg
attgagcgcgaagtagaaaagcagaacatcaccgaaggcctcggcctgggcgaagcgccc
gagttcgaccccaaacgcttcagtggcctgcgcggcaaagtaggcggccggcccgagcgc
ggcccccgcagcggcggttccggcggtggccgtgaccgtagcccccgccccgaaggcggc
agcggtggcggccgctccggcggtggccgcgacggtgtccgccccaaccgcggcgacggc
aagcccgacgccgaccagcaggcccgcattgccaaggcccaggccgccctggccgccctc
gatgccggccaggccccggcccagccctaccagcgcccaccccgcgaagaccgccccgaa
ggcagcgacagccgcccccgccgcgagccgcgtgaaccccgcgccgaaggcgaagctcgt
ccaccccgcgaaccacgtgccccgcgccccgaaggcgaggcccgcccgccccgcgaaccg
cgggctccacgcaccgaaggcgaagccgctgctgagccgcgtgccgaaggcgacaaagcc
gaaggccagcgccgccgcaaacgcgggggccgcaaccgctccggccgcggcccccgcccc
gagggtggtgccgctacctccgaggcttctgccccggtacgccccggccgctga
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