Hymenobacter sp. APR13: N008_15670
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Entry
N008_15670 CDS
T03213
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hym
Hymenobacter sp. APR13
Brite
KEGG Orthology (KO) [BR:
hym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hym03016
]
N008_15670
Enzymes [BR:
hym01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N008_15670
Transfer RNA biogenesis [BR:
hym03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N008_15670
Prokaryotic type
tRNA splicing ligases
N008_15670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AII53411
LinkDB
All DBs
Position
3687314..3688687
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AA seq
457 aa
AA seq
DB search
MRQLGFPEGRAIGLALAQLQRKHLKKLSQTDQLALLTALLANPTDFLTDLDWSHTAAALL
PAPSRHIALAERKSYAVFGAEHIEQGAIHQMETAMKLPVTMAGALMPDAHHGYGLPIGGV
LATDNAVIPYAVGVDIGCRMALSVFALPPKFLEQRVQELRKLLLEHTRFGNKQGFVRGQK
LDHAVLERPEFRDINFLRNKQGTAAEQIGTSGGGNHFVEWGVVDILDPTNELGVPVGQYL
GLLSHSGSRGLGASVANHYTKLAKDVCQLPAEAQHLAWLSLDSEAGQEYWAAMNLAGDYA
SACHHQIHQRLAKALGERPLAKVENHHNFAWKERLADGREAIVHRKGATPAGAGVLGIIP
GSMTAPGFIVRGRGEAASLSSASHGAGRAMSRTRAKQELGEAEVRRYLQQHGIELIGGGL
DEAPQAYKDIRAVMQSQTELVDVLGSFTPRIVRMEGG
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
ttgcgccagctcgggtttcccgaaggccgggctattggcctggcgctggcccagctgcag
cgcaagcacctcaaaaaactctctcaaaccgaccagttggctctgctcacggcgctgctg
gcaaaccccactgactttcttaccgacctcgactggagccatacggccgccgcgctgctg
ccagcgcccagccgccatattgccctcgccgagcggaaaagctacgccgtcttcggggcc
gagcacatcgagcagggtgccatccaccagatggaaacggccatgaagctgcccgtaacc
atggccggcgccctcatgcccgatgcccaccacggctacggcctgcccatcggcggggtg
ctggccaccgacaacgccgtgattccctacgccgtgggcgtggacattgggtgccggatg
gcgctgtcggtgtttgcgctgccgcccaagttcctggagcaacgggtgcaggagctgcgc
aagctgctgctggagcacacgcggttcggcaacaagcagggcttcgtgcgcggccagaag
ctcgaccacgccgtgctggagcgccccgagttccgcgacattaacttcctgcgcaacaag
cagggcacggccgccgagcagattggcacgtccggcggcggcaaccacttcgtggaatgg
ggggtggtcgatatcctcgaccccaccaacgagctgggcgtgccggtgggccagtaccta
gggctgctctcgcacagcggctcgcggggcttgggcgccagcgtggccaaccactacacc
aagctggccaaagacgtctgccagctgcccgccgaagcccagcacttagcttggctttcc
ctggacagcgaggccggccaggaatactgggcggccatgaatctggccggtgactacgct
tcggcctgccaccaccagattcatcagcggctggccaaggccttgggcgagcggcccctg
gcgaaagtggaaaaccaccacaacttcgcctggaaagagcggctggctgatggccgtgaa
gccattgtgcaccgcaagggcgctacgccggccggggccggcgtgcttggcattattccc
ggctccatgacggctcccggcttcattgtgcgggggcggggcgaggcagcctcgctgtcg
tcggcgtcgcacggggcggggcgggccatgtcccggacccgggccaagcaggagctgggc
gaagcggaagtgcggcgctacctgcagcagcacggtatcgagctgatcggcggcggcctc
gacgaagctccgcaggcctacaaagacatccgggccgtgatgcagagccagaccgagctg
gtggatgtgctgggctcattcacgccgcgtatcgtgcggatggaaggcggctga
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