Hymenobacter sp. APR13: N008_16275
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Entry
N008_16275 CDS
T03213
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hym
Hymenobacter sp. APR13
Pathway
hym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N008_16275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hym03019
]
N008_16275
03400 DNA repair and recombination proteins [BR:
hym03400
]
N008_16275
Enzymes [BR:
hym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N008_16275
Messenger RNA biogenesis [BR:
hym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N008_16275
DNA repair and recombination proteins [BR:
hym03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N008_16275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Sigma70_r4_2
HTH_7
HTH_38
TniB
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AII53526
LinkDB
All DBs
Position
complement(3837388..3839643)
Genome browser
AA seq
751 aa
AA seq
DB search
MLFAAEPLAPTLESARKVLKQYYGYDTFRPMQEDIIENILGGRDTVVLMPTGGGKSVCFQ
IPAVVSEGVCVVVSPLIALMKDQVEALKANGISAAYINSSVGQSEQNAICGDCLNGYMKL
LYVSPEKLLSEGFLQFLKRLRISMFAIDEAHCISSWGHDFRPEYTQLRVLREQFPQVPII
ALTATADRLTQRDIQQQLRMHEPQVFLSSFDRPNLNLIVRPGQDRVGGILDFLGRHPGEA
GIIYCLSRKQCETLTAKIQAKGIKAGFYHAGLTPNQRSVVQEGFLKDDLQVIVATIAFGM
GIDKSNVRWVIHYNIPKNIEGYYQEIGRGGRDGSPATAVLFYSFADVMQLREMLSKDNPQ
LTQLNLTKLERMQQFAEAASCRRKILLNYFGETLATDCGNCDICRNPPTTFDGSLIAQKA
LSAVVRMRQRAGIGLLIDVLRGMRNQAVLSGGYDQIKTYGAGSDLPYLDWYSYIHQMLND
GLLYIAYEEGYALKITDLGREVLQGQRPLALKKFQPSEKAEKPTRGRKAAAAAAAPASRE
AQLFEALRGLRKRIADEQGVPPYVIFTDATLQEMAQERPINRVAMLGISGVGMKKFDTYG
EAFIREIMANGGNPAALAELDEDTLPLATLDPDDPGAPRPARKREANTEAGSTAETSFQL
HRMGLSVEAIAERRGLAVSTVQTHLTTCYASGQDLRISDFLTPEALAEIQTAQAQLGGGP
MLRDLFDHLREKYDYFRLRLALMYFKKLKGE
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgttatttgccgccgaacccctcgcccccacgctcgaatctgcccgtaaagtcctcaag
cagtactacggctacgacaccttccggcccatgcaggaagacatcatcgagaacattctg
ggcggccgcgacacggtcgtgctcatgcccaccggcggcggcaaatcggtgtgctttcag
attccggccgtcgtcagcgaaggtgtgtgcgtggtggtgtcgccgctgattgcgctgatg
aaagaccaggtggaagccctgaaggccaacggcatttcggcggcctacatcaacagcagc
gtgggccagagcgagcagaacgccatctgcggcgactgcctcaacggctacatgaagctg
ctctacgtcagccccgagaagctgctttccgagggcttcctgcagtttctcaagcggctt
cgcatcagcatgtttgccattgatgaagcccactgcatcagctcctggggccacgacttc
cggcccgagtacacccagctgcgggtgctgcgcgagcagtttccgcaggtgcccatcatt
gccctcaccgccactgccgaccgcctcacccagcgcgacatccagcagcagctgcgcatg
cacgagccgcaggtgtttctctccagcttcgataggcccaacctcaacctcatcgtgcgc
cccggccaggaccgcgtgggtggcatcctcgactttctgggccgccaccccggcgaggcg
ggcatcatctactgcctctcgcgcaagcagtgcgaaaccctcacggccaagattcaggcc
aagggcatcaaggccggcttctaccacgccggcctcacgcccaaccagcgcagcgtggtg
caggaaggcttcctgaaagacgatttgcaggtgattgtggccaccattgccttcggcatg
ggcatcgacaagagcaacgtgcgctgggtgattcactacaacatccccaagaacatcgag
ggctactaccaggaaatcgggcgcggcggccgcgacggcagcccggccacggccgtgctg
ttctatagcttcgccgacgtgatgcagctgcgcgagatgctgtccaaggacaatccgcag
ctcacccagctcaacctcaccaagctggagcgcatgcagcagtttgcagaggccgccagc
tgccgccgcaaaatcctgctcaactacttcggcgaaaccctggccaccgactgcggcaac
tgcgacatctgccgcaacccgcccaccaccttcgacggcagcctcattgcccagaaggcg
ctatcggcagtggtgcgcatgcgccagcgggccggtattggcctgctgattgacgtgctg
cgcggcatgcgcaaccaggccgtgctgtcaggcggctacgaccagatcaaaacctacggc
gccggctccgacctgccctacctcgactggtacagctacatccaccagatgctgaacgac
ggcctgctctacattgcctatgaggaaggctacgccctgaaaatcacggacctgggccgc
gaggtgctgcagggccagcggccactggcgctcaagaagttccagccatccgagaaagcc
gagaagcccacacggggccgcaaagccgcggccgcagccgccgcgccggccagccgcgag
gcgcagctgttcgaggccctgcgcggcctgcgcaagcgcatcgccgacgagcagggcgtg
ccgccgtacgtcatcttcaccgatgccacgctgcaggaaatggcccaggagcgccccatc
aaccgggtggccatgctgggcatttcgggcgtgggcatgaagaagttcgacacctacggc
gaggcctttatccgcgaaatcatggccaacggcggcaaccccgccgccttggccgagctg
gacgaagacacgctgccactggccactctcgaccccgacgacccgggcgccccccgccct
gcccgcaagcgcgaagccaacaccgaagccggcagcaccgccgaaacctcgtttcagctg
caccgcatgggcctgagcgtggaagccattgccgagcgccgcggcctggccgtatccacg
gtgcaaacccacctgaccacctgctacgccagcggccaggatttgcgcatcagcgacttt
ctcacgcccgaggccctggccgaaatccagacggcgcaggcccagctcggcggcggcccc
atgctccgcgacctgttcgaccacctgcgcgagaaatacgactacttccggctgcggctg
gcgctgatgtatttcaagaagctgaaaggcgagtag
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integrated database retrieval system
