Hymenobacter sp. APR13: N008_16410
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Entry
N008_16410 CDS
T03213
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hym
Hymenobacter sp. APR13
Pathway
hym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N008_16410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hym03019
]
N008_16410
03009 Ribosome biogenesis [BR:
hym03009
]
N008_16410
Enzymes [BR:
hym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N008_16410
Messenger RNA biogenesis [BR:
hym03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N008_16410
Ribosome biogenesis [BR:
hym03009
]
Prokaryotic type
rRNA helicases
N008_16410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AII53552
LinkDB
All DBs
Position
3867924..3869840
Genome browser
AA seq
638 aa
AA seq
DB search
MENETVKTKFSELTLSEEMQRAITEVGYEEASPIQAAGIPVLLQGRDVIGQAQTGTGKTA
AFSIPAIERIDTDSREVQCLVLCPTRELAVQVSGEIQKLGKYKRGLAVVPIYGGSSYDRQ
FRALERGVQIVIGTPGRVMDHIERGTLKLEHCKMIILDEADEMLDMGFRDDIETVLKKMP
EDRQTVFFSATMSKPIMEMTKRYQKDPQIVKVNHQEMTVTNIEQSYFEVRGPQKKDVLTR
LIDMYNIKSGIVFANTKRMVDEIVGDLQAKGYFAEGLHGDMGQQQRQNTLDKFRKGTLEI
LVATDVAARGIDVDNVEVVVNYDLPADEEYYVHRIGRTGRAGKQGKAFTFVSGRDIYKLR
DIMRFTKATIKQERVPSFEDVSEVKTTLMLNSIKEVIEKGNLDKYVARVQRLIDQDQEDG
ITSLDVAAALLKMTMKEDKRAQESLDASRTQGAARAGFTRLFVTMGKKDRLHPRDIVDLI
AENTSLTASKVGDIALYDKFSFVEVPNEFVEEVVSQLGRSSIQGRPVAFNIATPRQEGDA
QQEGGNRGGFGGERPRRGPGGFGGGERREGGGSYGGNRGGSYGDRREGGSSYGGNRGGGS
YGGNRGGGSYGGGSYGGGNRREGGSSYGGGYKGKRSDD
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgaaaccgttaagaccaagttcagcgagctgaccctctctgaagaaatgcag
cgtgccatcaccgaagttggctacgaagaagcatcccccatccaggccgccggcattccg
gtcctgctccagggccgcgacgtaatcggccaggcccagaccggcaccggcaaaaccgcc
gccttctccatccccgccattgagcgcatcgacaccgattcgcgcgaagtgcagtgcctc
gtgctctgccccacccgcgagctggcggtgcaggtttcgggcgaaatccagaaactgggt
aaatacaagcgtggtctggccgtggtgcccatctacggtggctcctcgtacgaccggcag
ttccgcgccctagagcgtggcgtgcagatcgtaattggtacccccggccgcgtaatggac
cacatcgagcgtggtacgctcaagctggagcattgcaaaatgatcatcctcgatgaggcc
gacgaaatgctcgacatgggcttccgcgacgacatcgagacggtgctcaagaaaatgccc
gaagaccgccagacggtattcttctcggctaccatgagcaagccgatcatggagatgacc
aagcgctaccagaaggatccgcagatcgtgaaggtgaaccatcaggaaatgacggttacc
aacatcgagcagagctacttcgaggtgcgcggtccgcagaaaaaagacgtgctgacccgt
ctcatcgacatgtacaacatcaagtcgggcatcgtcttcgccaacacgaagcgcatggtc
gacgagattgtgggcgacctgcaagccaaaggctacttcgccgaaggtctgcacggcgac
atgggccagcagcagcgccagaacacgctcgataaattccgcaaaggtaccctcgaaatc
ctggtagctaccgacgtagccgcccgcggtatcgacgtggacaacgtggaagtggtagta
aactacgacctgcccgccgacgaggaatactacgtgcaccgcatcggccgtaccggccgc
gccggcaagcagggcaaggccttcaccttcgtgagcggccgcgacatctacaagctgcgc
gacatcatgcgcttcaccaaagccaccatcaagcaggagcgcgtgccgtccttcgaagat
gtgtcggaggtgaaaaccacgctgatgctcaactccatcaaggaggtgattgagaaaggc
aacctcgacaagtacgtggcccgcgtgcagcgccttatcgaccaggaccaggaggatggc
atcacgtcgctggacgtagccgccgccctgctcaagatgacgatgaaggaagacaagcgc
gcccaggaaagcctcgacgccagtcgtacccagggtgccgcccgcgccggcttcacccgt
ctgttcgtgacgatgggcaagaaggaccgtctgcacccccgcgacatcgtggacctgatt
gccgaaaacaccagcctcacggccagcaaagtcggcgacattgccctctacgacaagttc
agcttcgtggaagtaccgaatgagttcgtggaagaagtggtgagccagctcggccgcagc
tccatccagggtcgtccggtagccttcaacattgctacgccccgccaggaaggcgacgcg
cagcaggaaggcggtaaccgcggcggcttcggcggcgagcgtcctcgtcggggcccgggt
gggttcggcggtggtgagcgtcgcgaaggcggcggcagctacggcggcaaccgcggcggt
agctacggcgaccgtcgggaaggtggcagcagctacggcggcaaccgcggtggcggctcc
tatggtggcaaccgcggtggcggtagctacggcggcggctcctacggcggtggcaaccgc
cgcgaaggtggcagcagctacggcggcggctacaaaggcaagcgcagcgacgactaa
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