Hymenobacter sp. APR13: N008_16780
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Entry
N008_16780 CDS
T03213
Name
(GenBank) hypothetical protein
KO
K06168
tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:
2.8.4.3
]
Organism
hym
Hymenobacter sp. APR13
Brite
KEGG Orthology (KO) [BR:
hym00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hym03016
]
N008_16780
Enzymes [BR:
hym01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.3 tRNA-2-methylthio-N6-dimethylallyladenosine synthase
N008_16780
Transfer RNA biogenesis [BR:
hym03016
]
Prokaryotic type
tRNA modification factors
Methylthiotransferases
N008_16780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
AII53622
UniProt:
A0A076HYA3
LinkDB
All DBs
Position
complement(3958810..3960273)
Genome browser
AA seq
487 aa
AA seq
DB search
MSQPLITLDFLDTPTLPTPAVDATTHAHEPSGEVRVSAATRTGQGRKLYIESYGCQMNFS
DSEIVSSILFEQGFDTTDDLASADLVLLNTCSIREKAEQTVRMRLSQINSYKKRRPSMLV
GVLGCMAERLKSKFLEEEKLVDLVVGPDAYRDLPQLIQQVDGGQKAVNVLLSREETYADI
TPVRLNSNGITAFISIMRGCDNMCSFCVVPFTRGRERSRDAHSIVREAQDLVAAGYKEVT
LLGQNVDSYKWASEDGQEHVNFAQLLERVALVSPELRVRFSTSHPKDITDEVLHTMARYD
NICKYIHLPAQSGNSRILALMNRTYDRPWYEERVQAIRRILGDDCAISTDMISGFCSETE
EEHQDTLSLMEYVKYDMAFMFFYSERPGTLAARKLEDDVPLEVKKRRLAEVIATQQQHSR
LRNLAGVGKVHRVLAENFSKRSNEHLSGRNSQNQVVIFPKKHYQKGDYVDVFVHESTTNT
LLGEAVD
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaccgctgattacgctcgactttctcgacacgcccaccctgcccacgcctgcc
gtggacgccaccacccatgcccacgagccctccggcgaggtgcgcgtgagtgcggccacc
cgcaccggccagggccgcaagctctacatcgaaagctacggctgccagatgaacttctcg
gactcggaaatcgtgtccagcatcctgtttgagcagggttttgataccaccgacgacttg
gccagcgccgacctcgtgctgctcaacacctgctccatccgcgagaaggccgagcagacc
gtgcgcatgcgcctctcccagatcaacagctacaaaaagcgccgccccagcatgctggtg
ggcgtattgggctgcatggccgagcgcctgaaaagcaagtttctggaagaagaaaagctg
gtggacttggtagtgggccccgacgcctaccgcgacctaccccagctcatccagcaggta
gacggcggccagaaagccgtgaacgtgctgctgagccgcgaggaaacctacgccgacatc
acgcccgtgcgcctgaactccaacggcatcacggccttcatcagcatcatgcgcggctgc
gacaacatgtgctcgttctgcgtggtgcccttcacccgcggccgcgagcggagccgcgac
gcccacagcatcgtgcgcgaggcgcaggacctggtggcggctggctacaaggaagttacc
ctgctcggccagaacgtagactcctataaatgggcctctgaagacggccaggagcacgtg
aactttgcgcagctgctggagcgcgtggcgctggtgagcccggagctgcgggtgcgcttc
tccacctcgcaccccaaagacattacggacgaggtgctgcacaccatggcccgctacgac
aacatctgcaaatacatccatctgccggcccagagcggtaattcgcgcatcctggccctg
atgaaccgcacctacgaccggccctggtacgaggagcgcgtgcaggccatccgccgcatc
ctcggcgacgactgcgccatcagcaccgacatgatttcgggcttctgctccgaaaccgag
gaagagcaccaggacacgctcagcctgatggagtacgtgaaatacgacatggccttcatg
ttcttctactccgagcgccccggcacgctggccgcccgcaagctcgaggacgatgtgccg
ctggaggtgaaaaagcgccgtctggccgaggtcattgccacgcagcagcagcacagccgc
ctgcgcaacctggccggcgtaggcaaggtgcatcgtgtactggccgaaaacttctccaag
cgcagcaacgaacacctcagcggccgcaacagccagaaccaggtggtcatcttccccaaa
aagcactaccagaaaggcgactatgtggacgtattcgtgcacgagtccacgacgaacacg
ctgctgggcgaggcggtagactaa
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