Hydrogenophaga sp. BPS33: F9K07_01955
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Entry
F9K07_01955 CDS
T06379
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
hyn
Hydrogenophaga sp. BPS33
Pathway
hyn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F9K07_01955 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyn03400
]
F9K07_01955 (xth)
Enzymes [BR:
hyn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
F9K07_01955 (xth)
DNA repair and recombination proteins [BR:
hyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
F9K07_01955 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
DUF5648
Motif
Other DBs
NCBI-ProteinID:
QHE83729
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All DBs
Position
433137..433928
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AA seq
263 aa
AA seq
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MFKLTSLNLNGIRSATTKGLEKWLATHAPDCICVQEVKCQASDVEGRFEQLAGLKGHFHF
AQKKGYSGTGIFTRHEPSDVVIGFGSREFDDEGRFTELRFDTPQRKLSILSVYFPSGSSG
PERQDAKYRFLADFYPHLQSLKNGREFILCGDVNIAHQEKDLKNWRSNQKNSGFLPEERA
WMTTLLDAGGMVDVYRRLQPDTTDACYTWWSNRGQAYANNVGWRLDYHLATPALAALART
ESIYKTEKFSDHAPISIDYDFQL
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
ttgttcaaactgaccagcctcaacctcaacgggattcgctccgccaccaccaagggcttg
gagaaatggctggccacacacgcgcccgattgtatttgcgtgcaggaggtgaagtgccag
gccagcgatgtggagggccgcttcgagcaactcgccgggctcaagggccatttccacttt
gcgcagaagaagggctattccggcaccggcatcttcacccgccacgaaccgagcgacgtg
gtgatcggctttggctccagggagtttgatgacgaagggcgctttaccgaactgcgtttc
gacacgccacagcgcaagctctccatcctgagcgtgtattttcccagcggctcgtcgggc
ccggaacgccaggacgccaagtaccgcttcctggccgacttctacccgcacctgcagtcg
ctcaagaacgggcgcgaattcatcctgtgtggcgacgtgaacatcgcgcaccaggaaaag
gacctgaagaactggcgcagcaaccagaagaacagcggcttcctgccggaagagcgcgcc
tggatgaccacgctgctggacgccggcggcatggtggacgtgtaccgccgcctgcagccc
gacaccaccgatgcctgctacacgtggtggagcaaccggggccaggcctacgcgaacaac
gtgggctggcggctggactaccacctggcgacgccggcgctggcggcgctggcgcgcacc
gagtcgatttacaagacggagaagttctctgaccacgcgccgatcagcatcgactacgac
tttcagttgtga
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