Hydrogenophaga sp. BPS33: F9K07_08455
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Entry
F9K07_08455 CDS
T06379
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hyn
Hydrogenophaga sp. BPS33
Pathway
hyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9K07_08455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyn03019
]
F9K07_08455
03009 Ribosome biogenesis [BR:
hyn03009
]
F9K07_08455
Enzymes [BR:
hyn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F9K07_08455
Messenger RNA biogenesis [BR:
hyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F9K07_08455
Ribosome biogenesis [BR:
hyn03009
]
Prokaryotic type
rRNA processing factors
F9K07_08455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
QHE84914
UniProt:
A0A6P1ITB5
LinkDB
All DBs
Position
complement(1786346..1789357)
Genome browser
AA seq
1003 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFAAGVPVNQARINDVIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRQELKQALDQLEYPNGMSIIARTAGIGRDAPELQ
WDLNYLLKLWNAIDGAAKGGKGAYLIYQESSLVIRAIRDYFNSDIGEILIDTDDIFEQAH
QFMSHVMPEHGHRVKRYRDDAPLFSRFQIEHQIETAYSRIVQLPSGGAIVIDQTEALVAV
DVNSARAIKGGDIEETATRTNLEAADEVARQARLRDLGGLVVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGSISKFGLLEMSRQRLKPALNEGASIPCPRCGGSGHIRDTESSALQ
ILRVIQEESLKDSTAAVLVQVPVEVASFLLNEKRTEITKIELKQRVNVMLVPNKSLDTPN
YKLERLKHDDPRLDNLEASYKLAEEEEDVASFTRRSQERTNKQEPVIKGVLPDGPAPVAA
PRPETPAAAPAAVPAAQRAPVAPAPAPAEKGFFGWLKSLFSAEPAPVKSAATEAPAPSKP
AREERTEGGRREGSRNRGSRDRDGRGSREGREGAGRNGGRGGEARADGGRVEGRNEQRGE
GRRGGEGRGDNRSEARGERGERSENRNEPRGEGRQRNDNRRDGGRREAAATDNVANALPL
AATAQGEHAPEAAEGQPRRERERRPRGERGENRRRPEEGEVAAVPAAAQDNDNDGNAGVA
TDAPREGEATENGAPRGNRERRSRDRYGRDRRERGPREDVAESEESAGAPQADAPAAAVV
EPAADTTAYEAPVRSYFSVPTSPLVNEAPASVASEPAAPAAMAEPTPAPAPAPAPTAPRA
PAPVAAPVAAPVAAPVPVRGLPKVPAYALSIEEMNQIAQSSGLEWVNSNAEKVAQAQAAI
AAEPKPIHVPREPKPAVMLDEGPLVLVETRKDLRDIKLPFENA
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaatgccacgcaggccgaagagcgccgcctggccatcgtcgat
gggcaaaagctgctcgactacgaaatcgaaatcgaagggcgcgaacagcgcaaaggcaat
atctacaaggcggtcgtcacccgcgtcgaaccgtccctggaggcttgcttcgtcgactac
ggcgaagaccgccacggcttcctgcctttcaaggaaatctcgcgccagtatttcgccgcg
ggcgtgccggtgaaccaggcgcgcatcaacgacgtgatcaaggaaggccaggaactgctg
gtccaggttgaaaaggaagaacgcggcaacaagggtgcggccctcaccaccttcgtgagc
ctggccggccgctacgtggtgctgatgcccaacaacccgcgcggcggcggcgtgagccgg
cgtatcgaaggcgaagaccgccaggaactcaagcaggcgctagaccagctggagtacccc
aatggcatgagcatcatcgcccgcaccgccggcatcggccgcgatgcgcccgagctgcag
tgggacctgaactacctgctcaagctgtggaacgccatcgacggcgcggccaagggcggc
aagggcgcgtacctgatctaccaggaatcgagcctggtcatccgcgcgatccgcgactat
ttcaacagcgacatcggcgagatcctgatcgacaccgacgacatcttcgaacaggcgcac
cagttcatgagccacgtgatgcccgagcacgggcaccgcgtgaagcgctaccgcgacgac
gcgccgctgttctcgcgcttccagatcgagcaccagatcgagaccgcctacagccgcatc
gtgcagttgcccagcggcggcgccatcgtgatcgaccagaccgaagcgctggtggcggtg
gacgtgaactcggcgcgcgccatcaagggcggtgacatcgaggaaaccgcgacccgcacc
aacctcgaagctgccgacgaagtggcacgccaggcgcgcctgcgcgacctgggcggcctg
gtggtgatcgacttcatcgacatggaagagtcgaagaaccgccgcgaggtcgaaaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcgcgtgtgcagttcggctccatcagcaagttc
ggcctgctcgaaatgagccgccagcggctcaagcccgcgctcaacgaaggcgcctccatt
ccttgcccgcgttgcggtggctcgggccacatccgcgacaccgaaagctcggcgctgcag
atcctgcgcgtgatccaggaagagtcgctcaaggacagcacggccgccgttctggtgcag
gtgccggtcgaagtggccagtttcctgctcaatgagaagcgcaccgagatcaccaagatc
gaactcaagcagcgcgtcaatgtgatgctggtgcccaacaagtcgctcgatacacccaac
tacaagctggagcggctgaagcacgacgacccgcgcctggacaacctcgaagccagctac
aagctggccgaggaggaagaggatgtggccagcttcacgcgccgcagccaggagcgcacc
aacaagcaggaacccgtgatcaagggcgtgctgcccgatggccccgcacccgtggccgcg
ccgcgaccggaaacgcctgcggccgcacccgcagccgtgccggcggcccagcgcgcgccc
gtggcccccgcgccagcccctgccgagaaaggcttcttcggctggctcaagagcctgttc
agtgcggaacccgcgccggtcaagtccgccgcgacagaagcacccgcaccgagcaagcct
gcgcgcgaggaacgcaccgaaggtggccgacgcgaaggcagccgcaaccgcggtagccgt
gaccgcgacggccgtggttcgcgagaaggccgtgaaggcgccggccgcaacggtggccgt
ggtggcgaggcccgcgccgacggtggccgggtggaaggccgcaacgaacaacgcggtgaa
ggccgccggggcggtgaaggccgtggtgacaaccgcagcgaagcacgcggtgagcgcggc
gagcgaagcgagaaccgcaacgagccacgcggtgaaggccgccagcgcaacgacaaccgc
cgcgacggcggccgccgcgaagccgccgccacggacaacgtcgccaacgccctgcccttg
gccgcaacggctcagggcgagcacgcgcccgaggccgcggaaggccagccgcgccgtgag
cgcgaacgccgcccccgtggcgagcggggcgagaaccgccgccgcccggaagaaggcgaa
gtcgccgctgtaccagccgcagcgcaggacaacgacaacgacggcaacgccggtgtcgcc
accgatgcaccgcgcgagggtgaggccacggaaaacggcgcaccgcgcggcaaccgcgag
cgccgcagccgcgatcgctatggccgcgaccgccgcgagcgcggcccacgcgaagatgtg
gccgagagcgaagaaagcgctggcgcgccgcaggccgatgcgcccgccgcagcagtggtc
gagcccgctgccgacacgaccgcctacgaggcccctgtgcgcagctacttcagcgtgccc
acgtcacccctggtgaacgaagcaccggccagcgtagccagcgagcccgcagcgccagca
gcaatggccgagccaaccccggctcccgcacccgcacccgcaccgaccgcgccgcgcgcg
ccggccccagtggcggcaccggtcgcggcaccggtcgcggccccagtccccgttcgtggc
ctgcccaaagtgccagcgtatgccttgtcgatcgaggagatgaaccagatcgcccagtcc
agcggtctcgagtgggtgaactccaatgccgagaaggtggcccaggcgcaagccgccatc
gccgccgaacccaagccgatccatgtgccgcgcgaacccaagccggcggtgatgctggac
gaaggtccgctggtgctggtggaaacgcgcaaggatctgcgcgacatcaagctgccgttc
gagaacgcctga
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