Hydrogenophaga sp. BPS33: F9K07_13075
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Entry
F9K07_13075 CDS
T06379
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hyn
Hydrogenophaga sp. BPS33
Pathway
hyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9K07_13075 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyn03019
]
F9K07_13075 (rnr)
03016 Transfer RNA biogenesis [BR:
hyn03016
]
F9K07_13075 (rnr)
Enzymes [BR:
hyn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
F9K07_13075 (rnr)
Messenger RNA biogenesis [BR:
hyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F9K07_13075 (rnr)
Transfer RNA biogenesis [BR:
hyn03016
]
Prokaryotic type
tRNA degradation factors
F9K07_13075 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QHE85769
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All DBs
Position
2804606..2806945
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AA seq
779 aa
AA seq
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MGFQENQKYSREKVNEKNSLLAEFEGVVSGHRDGHGFVIRDDGQADIYLPSNEMRAVLHK
DRVKARIVRLDRKGRPEGRVTEIVERSDSPIIGRLLQESGVWLVAPEDKRYGQDVLIPKG
ATGSAKPGQVVVVQLTEPPALYGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEFSQAA
LAQARALPDHVRSADHKHRVDLRDVPLVTIDGEDARDFDDAVYCEPAKVGKGKGWRLLVA
IADVSHYVETGSAIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPGVERLCMVCDML
VNAKGEVHAYQFYPAVMFSHARFTYTEVAAILQNTRGPEAAQRKPLVPYLLNLHDVYRAL
LAARNERGAVDFETTETQIVCDESGRIEKIVPRTRNDAHKLIEESMLAANVCSADFIQQS
KHAGLFRVHEGPTPEKQEILRNYLKAMGVSQTIGDNPKPADFQQIANATKDRPEAQQIHT
MLLRSMQQAIYTPINSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAILARKRYELPALP
TPGEAHAKLSKRLASRVRPPVAGEPVKKPSADTLAWQAAGLHCSANERRADEASRDVEAW
LKCKYMREHLGEEFSGVVTAVTSFGLFVTLDAMYVEGLVHITELGGEYFRFDEARQELRG
ERTGIRYALGSRVRVQVSRVDLDGRRIDFRLVSDNDDLVLRAMRDKTGTSGATDAGAPGG
RDGKARRNREAGGKAKAGRMDSTQTPVMDVKASVRKAADKKSSRGGARSTASQSRKSRR
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
ctgggctttcaggaaaaccagaagtatagcagagaaaaagtgaacgaaaaaaatagcctg
ttggctgaatttgaaggtgtggtttccggccaccgcgatggacacggttttgtgattcgc
gacgatggtcaggccgatatttatctcccctccaacgaaatgcgcgccgtcttgcacaag
gaccgcgtcaaggcccgcatcgtgcggctggaccgcaaaggccgccccgaggggcgcgtc
acagaaatcgtggagcgctccgattcccccatcattggccgcctgctgcaagagagcggt
gtctggctcgtggcgccggaagacaagcgctatggccaggacgtgttgattcccaagggc
gccaccggctcggccaaaccggggcaggtggtcgtggtgcaactcaccgaaccacccgcg
ctctacggccaacccgtgggccgtgtcaaagaggtgttgggcgagatcgacgaccccggc
atggaaatcgagatcgcggtgcgcaagtacggcgtgccgcacgagttctcgcaggccgcg
ctggcgcaggcccgcgcgctgcctgaccatgtgcgcagcgccgaccacaagcaccgcgtg
gacctgcgcgacgtgccgctggtgaccatcgacggcgaggacgcgcgcgacttcgacgac
gccgtgtattgcgagccggccaaggtcggcaagggcaagggctggcgcctgttggtcgcg
atcgccgacgtgagccactacgtggaaaccggctcggccatcgacgtggacgcttacgac
cgcgccacctcggtgtatttcccgcgccgcgtcataccgatgttgccggagaagctgtcc
aacggcctgtgctcgttgaaccctggcgtggaacgcctgtgcatggtctgcgacatgctg
gtcaacgccaagggtgaagtgcatgcctaccagttctatccggcagtgatgttcagccac
gcgcgcttcacttacacggaagtcgcggccatcctgcagaacacgcgcggacccgaagcc
gcgcaacgcaagccgctggtgccgtatctgctgaacctgcacgatgtgtaccgcgcgctg
ctggcggcgcgcaacgagcgcggcgcagtggacttcgaaaccaccgagacgcagatcgtg
tgcgacgagtcgggccgcatcgagaagatcgtgccgcgcacccgcaacgatgcgcacaag
ctgatcgaagagtcgatgctcgcggccaatgtctgctcggccgacttcattcaacagagc
aagcacgccggcctgttccgcgtgcacgaaggccccactcccgagaaacaggaaatcctg
cgcaactacctcaaggccatgggggtgtcgcagacgattggcgacaaccccaagccagcg
gatttccagcagatcgccaacgcgaccaaggaccgccccgaggcgcaacagatccacacc
atgctgctgcgctccatgcagcaggcgatctacacgccgatcaacagcggccacttcggc
ctggcgttcgaggcttacacccatttcaccagcccgatccgccgctatcccgacctgctg
gtgcaccgagtgatcaaggccatcctggcgcgcaagcgctacgagctacccgcactgccc
acaccgggcgaggcgcacgccaagctcagcaagcgcctggccagccgcgtgcggccgccg
gtggcgggcgagcctgtcaagaagccctcggccgacacgctggcctggcaggcagccggc
ctgcattgcagcgccaacgaacgacgggccgacgaagccagccgcgacgtggaggcctgg
ctcaaatgcaagtacatgcgcgagcacctgggcgaggagttcagcggtgtggtaacagcg
gtcaccagtttcgggctgttcgtcacgctggatgcgatgtacgtcgaaggactggtgcac
atcaccgagctcggtggcgagtacttccgcttcgacgaagcgcgccaggagctgcgcggc
gagcgcaccggcatccgctatgccttgggcagccgcgtgcgggtgcaggtgagccgcgtc
gatctggacgggcgccgcatcgatttccgcctggtcagcgacaacgacgatctggtgctg
cgcgccatgcgcgacaagaccggcacgtcgggcgcaaccgatgcaggcgcacccggcggg
cgcgacggcaaggcgcgccgcaaccgcgaagcgggaggcaaggccaaagcgggccgtatg
gacagcacgcaaacgccggtgatggacgtgaaggcgtctgttcgcaaggccgcggacaag
aagtcgtcgcgcggcggcgcacgcagcaccgcaagccagtcccgcaagagcaggcgttga
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