Hydrogenophaga sp. BPS33: F9K07_16335
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Entry
F9K07_16335 CDS
T06379
Name
(GenBank) AAA family ATPase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
hyn
Hydrogenophaga sp. BPS33
Brite
KEGG Orthology (KO) [BR:
hyn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyn03400
]
F9K07_16335
Enzymes [BR:
hyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F9K07_16335
DNA repair and recombination proteins [BR:
hyn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
F9K07_16335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QHE86360
LinkDB
All DBs
Position
complement(3522443..3525859)
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AA seq
1138 aa
AA seq
DB search
MSAAPGRSQARSHRSPQGEGTPVTAPAYRINGVSAEREAFYVLACDPTRSIAVEACAGAG
KTWMLVSRILRALLDGCAPQDILAITFTKKAAGEMRDRLNTELRRWSGLSDEQLTGELRA
RGLSAADALRRVPEARGLHARVNALGRTVQVRTFHSWFAALLRGSPLSVLQDMQLPVQYE
LLEDDARAVAQVWPRFYAALAASPADRQDFMDSVAQHGRHQTLVALKKALDKRVEFALAD
AAGVVAASVEPFAERYPALGDLATPELALLRPEARSRWHAWAKVLGTEANKTPKDSAAKI
IDAFELPDEPSRMQQRLALLRKAFLVADEDRLNSRLAKFEAAQAAELELIELCGALRQHR
AWAHHQRMARLARVLLASYAALKRERGWVDMNDVEGAARRLLGDAELSGWLQQRLDARVR
HVLIDEFQDTNPLQWQALYGWLSAYAGAGPGEAPCVFLVGDPKQSIYRFRRAEPQVFKAA
QAFVVQGLSGALLSCDHTRRCAPAVVEVLNAAMGAAVQAGQYSSDYRAHTTESTAPGEVR
SLPQLPRSLRDRHTGACDSGEWRDSLTTPRVLPEDSLAALEAAQAADWVALQIEEEGLHA
GDIMVLARRRERLGWMHEALRERGILSEQPEKLDLGESPAVLDVVALLDALVSTRHDLSL
ARALKSPLCGWSDDDLAQLARLRTRWTPPPGVDGARVRPSWWDVLQRFGSLPVHEQAGQA
QAPEQATRFVDTAQRLALYRDWLRTLPPHDALSALYDHGDVLARFAQHVPPGQRAAVLAQ
LRDLLTQSLAQDGGRFLTTYRFVRALKAGGIKATAVQTPDAVRLLTVHGAKGLEAHTVLM
LDTDTGPARPESMGVLVDWPGEAPLPRRFVFLASEKAPPACAVEALQQEQEARALEELNG
LYVAMTRAESRLLISSFEPHLRANAPTWYQRLQPLAAPMDTPPPATTHAQSGEGGNGALS
FELLGLPAVQPAPAPTPAPAAREAMDDTASRIGLALHRLLQWWPTPSEDFDWGPEHAQAV
AREFALDTVQARDALAMARRIIGGDAAWAWDAELLHHWGSEVELFHQGELLRLDRLVRRR
DTGEWWVLDHKSAAHPERQPALIAQMRGYRQAVAAANPGDTVRLAFINAQGRLIELQD
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcagcgccgggccgttcccaagcacgctcgcaccgcagcccgcagggcgaaggt
actccagtgaccgcacccgcctaccgcatcaatggcgtgagtgccgagcgcgaggccttt
tacgttctcgcatgcgaccccacccgcagcatcgcggtggaggcctgcgccggtgccggc
aagacctggatgctggtctcgcgcatcctgcgcgcgctgctcgacggctgcgcaccccaa
gacatcctcgcgatcaccttcaccaagaaagcggccggtgaaatgcgcgaccggctcaac
accgaactgcggcgctggtctggattgagcgacgaacaactgactggcgaattgcgcgcg
cgcggcctgagcgccgccgacgccctgcgccgcgtgcccgaggcgcgtggcctgcacgcg
cgcgtcaacgcgctcggccgcacggtgcaggtgcgcaccttccacagctggttcgccgcc
ttgctgcgcggctcgcccttgtcggtgttgcaggacatgcaattgcccgtgcaatacgaa
ctgctggaagacgatgcgcgcgccgtggcgcaggtctggccgcgtttctacgccgccttg
gccgcgagcccggccgaccgtcaggacttcatggacagcgtggcccagcacggccggcac
cagaccctggtggccctgaagaaggccctggacaagcgcgtggagttcgcgctggccgat
gcggccggcgtggtggcggcttcggtcgagccgtttgccgagcgctacccggccttgggc
gacctggcaacccccgagctggcgctgctgcgccccgaggcccgcagccgctggcacgcc
tgggctaaggtgttgggcaccgaggccaacaagacgcccaaggacagcgccgccaagatc
atcgacgccttcgaactgcccgacgaaccctcacgcatgcagcagcgcctggcgctgctg
cgcaaggcctttctggtggccgacgaagaccggctcaacagccgcctggccaagttcgaa
gccgcgcaagccgccgagctcgaactcatcgaactctgcggtgccctgcgccagcacagg
gcctgggcgcaccaccagcgcatggcgcggctcgcacgcgtgttgctcgccagttacgcg
gccctcaagcgcgagcgcggctgggtcgacatgaacgacgtggaaggcgcggcccgccgc
ctgctgggcgacgccgaactctccggctggctccagcagcgcctggacgcgcgcgtgcgc
cacgtgctgatcgacgagttccaggacaccaacccgctgcagtggcaggcgctgtacggc
tggctctcggcctatgccggcgcgggcccgggcgaggcgccgtgcgtgttcctggtgggc
gaccccaagcagtcgatctaccgcttccgccgtgccgaaccccaggtgttcaaagccgcc
caggccttcgtggtgcaggggctctcgggtgcgctgctcagttgcgaccacacgcgccgt
tgtgcgcctgcggtggtcgaggtgctcaacgccgccatgggcgcggctgttcaggccggc
cagtacagcagcgactaccgcgcacacaccaccgagagcaccgcgcccggtgaggtgcgc
agcctgccgcaattgccgcgcagcctgcgcgatcgccacaccggcgcatgcgacagcggc
gaatggcgcgacagcctcaccacgccgcgcgtcttgcccgaagacagcctggccgcgctc
gaagccgcgcaggcagccgactgggtggcgctgcagatcgaagaagaggggctgcacgcc
ggcgacatcatggtgctcgcgcgccggcgcgaacgcctgggctggatgcacgaagccttg
cgcgagcgcggcattttgagcgaacaacccgagaagctcgatctcggcgaatcgcccgcc
gtgctggacgtggtcgcgctgctggatgcgctcgtgtccacccggcacgacctgagcctg
gcgcgcgcgctcaagtcgccgctgtgcggctggagcgacgacgatctggcgcagcttgcg
cggctgcgcacgcggtggacgccaccacccggtgtcgatggcgcgcgcgtgcggccttcg
tggtgggacgtgttgcagcgcttcggcagcctgccggtgcacgagcaggccgggcaggcg
caagcgcccgaacaagccacgcgcttcgtggacaccgcacaacgcctcgcgctctaccgc
gactggttgcgcacactgccgccgcacgacgcgctctccgcgttgtacgaccatggcgat
gtgctcgcgcgtttcgcgcagcacgtgcccccgggccagcgcgccgccgtgctcgcgcaa
ctgcgcgatctgctcacacagtccctggcgcaggacggtgggcgctttctcacgacgtac
cgcttcgtgcgcgcgctcaaggccggtggcatcaaggccacggccgtgcagacgcccgat
gccgtgcgcctgctcaccgtgcatggcgccaaaggcctggaagcccataccgtgctgatg
ctcgacaccgacaccggcccggcgcggcccgagagcatgggcgtgctggtggactggccg
ggcgaagcacccttgccgcgccgcttcgtgttcctcgccagcgaaaaggcgccacccgcg
tgcgcggtcgaagccctgcagcaagaacaggaagcgcgcgcgctggaagaactcaacggg
ctctacgtggccatgacgcgcgccgaatcgcgcctgctgatctccagcttcgagccgcac
ctgcgcgccaacgcgcccacctggtaccagcgcctgcagccgctggccgcaccgatggac
acgccgccgcccgccaccacccatgcgcaaagcggcgaaggcggcaacggcgctttgagc
ttcgagctgctggggctgcccgctgtgcagcccgcgcctgcgccgacgccagcacccgcg
gcgcgcgaggccatggacgacaccgccagccgcatcggcctggcgctgcaccgcctgctg
caatggtggcccacgcccagcgaggatttcgattgggggcccgagcacgcgcaagccgtg
gcgcgcgaattcgcgctcgacaccgtgcaggcgcgcgacgccctggccatggctcgtcgc
atcatcggcggtgatgccgcctgggcctgggatgccgagctgctgcaccactggggcagc
gaggtcgaactgttccaccagggcgagctgttgcgcctggaccgcctggtgcgccggcgc
gacaccggcgaatggtgggtgctcgaccacaaaagcgccgcgcaccccgaacgacagccc
gcgctgatcgcgcagatgcgcggttatcggcaggccgttgcggcggccaatccgggagat
accgtgcggctggccttcatcaacgcccaagggcgcctcatcgaactgcaagactga
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