Hydrogenophaga sp. BPS33: F9K07_22485
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Entry
F9K07_22485 CDS
T06379
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hyn
Hydrogenophaga sp. BPS33
Pathway
hyn03410
Base excision repair
hyn03430
Mismatch repair
hyn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F9K07_22485 (recJ)
03430 Mismatch repair
F9K07_22485 (recJ)
03440 Homologous recombination
F9K07_22485 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyn03400
]
F9K07_22485 (recJ)
DNA repair and recombination proteins [BR:
hyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
F9K07_22485 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
F9K07_22485 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F9K07_22485 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Peripla_BP_6
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
QHE87469
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Position
4892390..4894114
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AA seq
574 aa
AA seq
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MKIIVRDVPPRAAWALEQSGMHPLLARLFAARGITTPDELDDALARLLPPSTMLGAQEAA
RALADARAAGKSICIVADYDCDGATACAVGLRGLRLLGFERVNYLVPDRVTDGYGLTPSI
AKRVKAQGADVLVTVDNGIASVEGVRAARELGLDVIVTDHHLPALKNGEVTLPQDCIIVN
PNQPGCGFESKSIAGVGVMFYVLLALRAELRERGVYTAQTQPKIDTLLPLVAMGTVADVV
RLDANNRRLVSQGLKRVRMGAMPAGMTALFNAAARKPAAATGFDFGFALGPRLNAAGRLA
DMTLGIECLTTDDGLRADELARTLDGINRERKAIEGDMREQALMMAEEMFDESEEPPPAL
VVFDPDFHEGVVGIVASRLKDKLHRPTFVFAASGAEGKEHELKGSGRSIAGFHLRDALDL
VAKRHPGVLLRFGGHAMAAGCTVDEEHLETFEAALQQVAHEWLDAATLQRRLEADGPLDP
KYRRTDVVDTLHKEVWGQGFAPPVFSEEVQVVSQRLVGEKHLALKLKHQGEPVDGIWFGH
TDPLPSRVKIAFRLDADEWQGQRRVRFLVEAAEV
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcatcgttcgagacgtgcccccacgcgctgcctgggcacttgagcagagcggc
atgcacccgctgctcgcacgcctgttcgccgcgcgcggcatcaccacccccgacgagctg
gacgacgcgctggcgcgcctgctgccaccctccaccatgctcggcgcgcaagaagcggcg
cgcgctctggccgatgcccgggcggccggcaaatccatctgcatcgtggccgactacgac
tgcgacggcgccacggcctgcgcggtcggcctgcgtggcctgcggttgctgggtttcgaa
cgggtgaactacctcgtgcccgaccgcgtgaccgacggttacggcctcacgccctcgatc
gcaaaacgtgtgaaggcgcagggcgcggacgtgctggtgacggtggacaacggcatcgcc
agcgtcgagggcgtgcgcgccgcgcgcgagctgggcctggacgtgatcgtgaccgaccac
cacctgcccgccttgaagaacggcgaggtcacgctcccgcaggactgcatcatcgtcaac
cccaaccagcccggctgcggcttcgagagcaagtcgatcgccggcgtgggcgtgatgttc
tatgtgctgctggcgctgcgcgctgagttgcgcgagcgcggcgtgtacacggcacagacc
cagcccaagatcgacaccttgctgccgctcgtggccatgggcaccgtggccgacgtggtc
cgcctggacgccaacaaccgccgcctcgtgtcacaaggcttgaagcgcgtgcgcatgggc
gcgatgcccgccggcatgacggcgctgttcaacgccgccgcgcgcaagccggcggcggcc
accgggttcgacttcggttttgccctcggcccgcgcctgaacgcagccggccgcctggcc
gacatgacgttgggcatcgaatgccttaccaccgacgatgggttgcgcgccgacgaactc
gcgcgcacgctcgatggcatcaaccgcgagcgcaaggcgatcgagggcgacatgcgcgag
caggccttgatgatggccgaggagatgttcgacgagtccgaagagccgccgcccgcgctg
gtggtgttcgacccggacttccacgaaggcgtggtcggcatcgtggcctcgcgtctgaag
gacaaactgcaccggcccactttcgtgttcgccgccagcggtgccgaaggcaaggagcac
gaactcaagggctcggggcgctcgatcgcgggcttccatctgcgcgacgcgctcgatctt
gtggccaagcgccacccgggcgtgttgctgcgctttggcggccacgccatggccgcaggc
tgcacggtggacgaggaacacctggaaactttcgaagccgctctgcagcaggtggcgcac
gaatggctggacgccgccacgttgcagcgccgcctggaggccgatggcccgctcgacccg
aagtaccgccgcaccgacgtggtggacactttgcacaaggaggtgtggggccagggcttc
gcgccgccggtgttcagcgaagaagtgcaggtggtgtcgcagcgtctggtgggggagaag
cacctggcactcaagctcaagcaccagggcgagccggtcgacggcatctggttcggccat
accgaccccttgccctcgcgcgtgaagatcgcgtttcggctggatgcggatgagtggcag
gggcagcggcgggtgcggtttctggtggaggctgcggaggtttga
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