Hydrogenophaga sp. BPS33: F9K07_24440
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Entry
F9K07_24440 CDS
T06379
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hyn
Hydrogenophaga sp. BPS33
Brite
KEGG Orthology (KO) [BR:
hyn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hyn03016
]
F9K07_24440
Enzymes [BR:
hyn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
F9K07_24440
Transfer RNA biogenesis [BR:
hyn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
F9K07_24440
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QHE87819
UniProt:
A0A6P1J848
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All DBs
Position
5310217..5312286
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AA seq
689 aa
AA seq
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MHILFDEAGKLLTGRLLSEAESSLQVELDSGKRVKVKAANALLRFDKPAPGQLMPAATAL
AESMELELAYEFAPEDEFGFADLAHEYFSDNATTTEQVAALICLQGAPHYFRRAGKGRYK
KAPPDVLAQALAAMEKKKQVQAQIEAWAAELAAGTCPEPVRQQLYKILFRPDKNAPEYKA
VVEAARTSQTAPLDLLQNAGAIHNAYQFHWQRFLFDQFPKGTGFPPLQAPVIADELPLAP
VQAFSIDDSATTEIDDALSLQGLGQGSVTLGIHIAAPGLAVLPEGAVDQVARQRLSTVYM
PGHKVTMLPDDVVQAYTLMEGRDCPAVSLYVTFDEATLAITDSRTALERVPIAINLRHDQ
LDEVITEAWLDGTPAADVKPEIAALQPSLAFLWRLARHLKTQREIVRGKPETFNRPDYTF
RLEGVAGDEPTGDERVLITTRKRGAPLDLMVSEAMILANSTWGNWLNECGVPGVYRSQAS
LQPGVKVRMGTKAQPHAGIGVKSYAWATSPLRRYVDLVNQWQIIACARHGKTAALAAPFK
PKDANLFGVIGAFDAAYSAYNGFQNGMERYWTLRYLRQEGITELTATLIKDNLVRADTLP
LVLPVLGAEGLPRGAHLRVKLGEIDDITLDLHGTVTERLDLALENADATEEGDTEDEDLG
APLALAIDVDEPQGEATAQAAQTPDPAGV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcacattctgtttgacgaagccggcaaattgttgaccggccgcctcctctccgaggcc
gaaagttctctccaggtcgagctcgattcgggcaagcgggtcaaggtcaaggccgccaac
gccctgctgcgcttcgacaagcccgccccgggccagctcatgcccgccgccaccgccctg
gccgagagcatggaactggaactggcctacgaattcgcccccgaagacgaattcggcttc
gccgacctggcgcacgagtatttcagcgacaacgccaccaccaccgagcaggtggctgcg
ctgatctgcctgcagggcgcgccgcactacttccgccgcgccggcaagggccgctacaag
aaggccccgcccgacgtcctggcccaggcactggccgctatggagaagaagaagcaggtg
caggcgcagatcgaggcctgggccgccgaactcgccgccggcacctgccccgagccggtg
cgccagcagctctacaagattctcttccggccggacaagaacgcgcccgaatacaaggct
gtggtcgaggccgcacgcaccagccagaccgcgccgctcgacctgctgcaaaacgccggt
gcgatccacaacgcctaccagttccactggcagcgcttcctgttcgaccagttccccaag
ggcacgggcttcccgccgctgcaggccccggtgatcgccgacgagctgcccctggctccg
gtgcaggcgttttccatcgacgactccgccaccaccgagatcgacgacgcgctctccctg
cagggcctggggcaaggcagcgtcacgctgggcatccacatcgccgcacccggtctggcg
gtgttgcccgaaggcgcggtcgaccaggtggcgcgccagcgcctgtccacggtctacatg
ccgggccacaaggtcaccatgctgcccgacgacgtggtgcaggcctacacgctgatggaa
gggcgcgactgcccggccgtgtcgctctacgtcaccttcgacgaagccaccctggccatc
accgacagccgcaccgcgctggagcgcgtgccgatcgcgatcaacctgcgccacgaccag
ctcgacgaggtgatcaccgaagcctggctcgacggcacacccgccgccgatgtgaaaccc
gagatcgctgcgctgcaaccctcgctggcttttttgtggcgtttggcgcgccacctgaaa
acgcaacgcgaaatcgtgcgcggcaagccggaaaccttcaaccgccccgactacaccttc
cgcctcgaaggtgtggcgggcgacgagcccaccggcgacgagcgcgtgctcatcaccacg
cgcaagcgcggcgcgccgctggacctgatggtctccgaggccatgatcctggccaacagc
acttggggtaactggctcaacgaatgcggcgtgcccggcgtctaccgcagccaggccagc
ctgcagccgggcgtgaaggtgcgcatgggcaccaaggcgcagccgcatgcgggcatcggc
gtcaagagctatgcctgggccacctcgcccttgcggcgctacgtggacctggtcaaccag
tggcagatcatcgcctgcgcgcgccacggcaagaccgccgcgctagccgcgccgttcaag
cccaaggacgccaacctgttcggcgtcatcggcgcgttcgacgctgcctacagcgcctac
aacggcttccagaacggcatggagcgctactggacgctgcgctacctgcgccaggaaggc
atcaccgaactcaccgccacgctgatcaaggacaacctggtgcgcgccgacaccctgccg
ctggtgctgccggtactgggcgccgaaggcctgccgcgcggcgcgcacctgcgcgtgaag
ctgggcgagatcgacgacatcacgctcgacctccatggcacggtcaccgagcggctggac
ctggccctcgaaaacgccgatgccaccgaggaaggggacaccgaagacgaggacctgggc
gcgcccttggccctggccatcgacgtcgacgagccgcagggcgaagccaccgcccaggcg
gcccagacgcccgatccggcaggggtctga
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