Hydrogenophaga sp. BPS33: F9K07_27090
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Entry
F9K07_27090 CDS
T06379
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hyn
Hydrogenophaga sp. BPS33
Pathway
hyn02020
Two-component system
hyn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hyn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
F9K07_27090 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F9K07_27090 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyn03021
]
F9K07_27090 (rpoN)
Transcription machinery [BR:
hyn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F9K07_27090 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
HTH_23
Motif
Other DBs
NCBI-ProteinID:
QHE88287
LinkDB
All DBs
Position
complement(5849824..5851464)
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AA seq
546 aa
AA seq
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MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLERSEDTAERETFG
LEQSDVPVSAGEQISDAALAEPPSAPPSSGESTSSTSADTGDGEGLEGKLDGASPVEESW
EGDGTVEMSPDDGEWGGDAPARNNGSNSDGDDTATAADLARVPVSLQDHLHEQARCLRLS
DEDSAALYFLIESLNEDGYLVDSLSDLATAWWHMSDRSRRVGGDDSPAGFEEIEVLEQRL
AMALQLLQHMDPTGVGARDLAECLRLQILELRNTPEARAALAICGQPLELMAKRDIKRLC
NLCGIDDETARGALALIARLEPKPGRRFIDVERNVVVPDVIVTHAGRGFKVILNPDVMPR
LRVHDVYANAMRQNRGGRDSGGEAGHAAMQQRLQEARWFIKNIQQRFDTILRVSSAIVER
QRNFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSSLGTE
TGGNASSTAVRALLKQFISAEEPTKPLSDNQLSDLLREQGIECARRTVAKYREALRIAPA
NLRKSL
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaggcctctcactgcgggtttcgcagcacctggcgctcacgcctcagttgcag
cagtcgatccgcctgctgcagctctccacgctggagatggcgcaggaagtcgagcagatg
ctcgacgaaaacccgtttctcgaacgttccgaagacacggccgagcgcgaaaccttcggc
ctggagcagtccgatgtaccggtgagtgcgggtgaacagatttccgacgccgcactggcc
gaaccgcccagcgcgccgccgagcagcggcgaatccaccagcagcaccagtgccgatacg
ggcgacggtgaaggcctggagggcaagctcgacggcgcgagccccgtggaggaaagctgg
gaaggcgacggcacggtggagatgtcgcccgacgacggcgaatggggcggcgacgcgccc
gcgcgcaacaacggcagcaacagcgatggcgacgacacggcgaccgccgccgatcttgcg
cgcgtgccggtgagcctgcaggaccatctgcacgaacaggcgcgttgcctgcgcctgtcc
gacgaagacagtgccgcgttgtacttcctgatcgagtcgctcaacgaagacggctacctg
gtggacagcctgagcgatctggccacggcctggtggcacatgtcggaccgttcgcgccgg
gtcggtggtgacgattcgccggccggctttgaagagatcgaagtgctggagcagcgcctg
gccatggcgctgcaactgctgcagcacatggaccccaccggcgtgggcgcgcgcgacctg
gccgaatgcctgcggctgcagatcctggagctgcgcaacacccccgaggcgcgcgccgcg
ctggccatctgtggccagccgctggagctcatggccaagcgcgacatcaagcgcctgtgc
aatctttgcggcatcgacgacgagaccgcgcgcggcgcgctcgcgctcatcgcccgcctg
gagcccaagccaggccgccgtttcatcgatgtggagcgcaacgtggtcgtgcccgacgtg
atcgtcacgcacgccgggcgcggtttcaaggtcatcctcaacccggacgtaatgccacgg
ctgcgcgtgcacgatgtctacgccaacgccatgcggcaaaaccggggcgggcgcgacagc
ggtggcgaagccggccacgcggcgatgcagcagcgcctgcaggaggcgcgctggttcatc
aagaacatccagcagcgcttcgacaccatcctgcgcgtctccagcgccatcgtcgagcgc
cagcgcaacttcttcatgcacggcgaactcgccatgcgcccgctggtgctgcgcgagatc
gccgacgagctgggcctgcacgagtccaccatcagccgcgtgaccacggcgaagtacatg
gccacgccgttcggcacctacgaactcaagtatttcttcggctcctcgctcggcacggag
acggggggcaatgcgtcgagcacggcggtgcgcgccttgctcaaacagttcatctcggcc
gaggaaccgaccaagccgctgtcggacaaccagctctccgacctgttgcgcgagcagggc
atcgagtgcgcgcgccgcaccgtggccaagtaccgcgaggcgctgcgcatcgcgcccgcc
aatttgagaaagtcgctttga
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