Hydrogenimonas sp. MAG: NNO_0627
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Entry
NNO_0627 CDS
T05789
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hyo
Hydrogenimonas sp. MAG
Pathway
hyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NNO_0627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyo03019
]
NNO_0627
03400 DNA repair and recombination proteins [BR:
hyo03400
]
NNO_0627
Enzymes [BR:
hyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NNO_0627
Messenger RNA biogenesis [BR:
hyo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NNO_0627
DNA repair and recombination proteins [BR:
hyo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NNO_0627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
AAA_22
HTH_Crp_2
AAA_30
TrmB
RPA_C
malic
AAA_16
Rrf2
AAA_11
FtsK_SpoIIIE
UBA_ARI1
wHTH-PRTase_assc
DUF4423
NirdL-like_HTH
Motif
Other DBs
NCBI-ProteinID:
BBG65330
UniProt:
A0A3G9H544
LinkDB
All DBs
Position
603781..608610
Genome browser
AA seq
1609 aa
AA seq
DB search
MEVAVNDRKILYLDIETDRKGKNLYEIGVLCGTRGYSSSSPQMISTFIRHCSHAEYLCGH
NLFDHDLSYINQHSKLFHDLSRFRIIDTLPLSLLFFSEKTHHALPKVYKSEDDFVNDPIK
DCELTRHLMEKLVTRWSDMPQPLQHILFTLLRKQERFTGFFDYLANKISFEILDTEQLVA
MIADEYDRSISDYTYLEEMIAESPVELAYILALLTPHIEIKAHPPKVLYDYPEIVEKQRR
LCYNIDSLKNELSVISEEIFGFSEFRIFPKLNPSLLSTNTISQRDIIEAALRRDSFLAVL
PTGGGKTFTFWLPAVIQASSYKALTVVISPLQALIEDHIKSFENKAANYRAVAISGFMTP
QERSEAIEQVANGVADILYIAPESLRSNTIFSLLKNRYIERFVVDEAHCLSTWGNDFRQD
YFYICEFIKDLLAAKSFQERIPVSCFTATAKPSVIDDIKNYFQEGLGLEMEEFLAKPERN
NLHYRALEAPRIKKYTVLLRLIQEHRGSSLVYIPTSTRQCDEVAEKLAMDTGKAVRSFHS
KLDSQEKMKILKDYIENEIDVIVATTAFGMGVDKPDITQVIHFEPSDSLENYAQEAGRGA
RDQHLEAVCPVLYDEADLDKHFQTLRRSKITVAEINSIFRVIKHHKGDIVLLSAKELAKE
AGWDVEDIEADVESKIKTILLELEREGYIRRKRNKVRFYGDSVAVESRDKLYAFIERNHK
SDEERWKYIEILNRLLGQGKERSIEIDDIARVLGIPREDVALILQELKEEGIIGDSRDMA
VKLLHEDLRALDRVLRIEKALLEFLRAYPGDIVAIKELNEALIEQGILCDNDNESELIRE
LIKGWRSRGLFSFTRMNRQQDRWMYSFLDAERFSSLLSKRQNLVRELMVWLLGRTTGEGN
IGFSLLELKKALKERYKLKELDRGLLFLHRHKFIMLLGGRFIYYNPLVIEKQEKIKITNK
RYTKVEYKQRLGTHYQIKTEAIHIMGEYANLLLNDPKKAGNFLQDYFTLRYDAFKRRYKL
FKETLSRPITKRRYEQIFKKLSPEQQAIIADQTSRAIMILAGPGSGKTRVLVHKIASLVL
TEDVKPENFMMLTFSRSAVREFRSRLHKLIGDTAYNMEISTFHAYALKLIGRTAENNRRV
LDGSIAEAARQIRAGQLNLPHLKALVLDEYQDINEAAFDLISAIAEMSPDMRVIAVGDDD
QCIMEYAGADVGFFERFEERFDTMEVEEDERSFTRYELLTNYRSNASVVNYAEAFISKVR
RRFKERPLIPYRKEGKKVEVIDYRGTSLVQPAMEWALKYLEESDEVAILAYTNDEVMRLY
SLLRAKGVAARYLIDRPRFEVKMIEEVAVFDRILNESVISGREYKKVDFERAMEHVETLY
AGSKNLPLLRKVVYGFLNESESLAASFWLEYLDELELEPLESEQGHVTISTIHKSKGLEF
SSVVLLAQNPVQNDIYRRLHYVGMTRAKDHLCILHRDDRSFLLPGHAHYRTMDALPEEQC
TSLIMVMGLSDIYLGFKGAQNRRHDLRIIAGEELLFRRSSYGIYQMYYKGHIVGQVSKKF
NEKLVELETKGYRISRVVVDYVVCWLDRKEGREVRHVLGWVEMTSGKPF
NT seq
4830 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagcagtgaacgacaggaagattctctatctcgatatcgaaacggaccgtaaa
ggaaaaaatctctatgagatcggcgtgctctgcggtactcgtggttacagtagcagttct
ccacagatgatctccaccttcatccggcactgttctcatgcagaatatctttgcgggcac
aatcttttcgatcacgatctatcctatattaatcagcacagtaaactatttcatgatttg
tcgcgattccggattattgatacacttccgctttcgttactctttttcagtgaaaagacc
catcatgcccttcccaaggtttacaaaagtgaggatgactttgtaaacgatccgatcaag
gattgtgaactgactcgccatctgatggagaaactggtaacacgatggagcgatatgccc
cagccgctgcaacacattctctttacattgctgcgcaagcaggagcgatttaccggtttt
tttgactatcttgcgaacaaaatcagttttgagattctcgatactgaacaactggttgcg
atgattgccgacgagtacgaccgttcgatcagcgattacacctatctggaagagatgatc
gccgaatcgcctgttgagcttgcttatatactggcgcttctcacacctcatatagagatt
aaagcgcatccgccgaaagtcctctatgactatcccgaaattgtggaaaaacagcgaaga
ctttgctacaacatcgatagtctcaaaaatgagctctccgtaatttccgaagagatattc
ggttttagtgaattccgtattttccccaagcttaacccctcgctactaagcaccaacaca
atctcccagcgcgatattattgaagcggcattaagacgggactcgtttttagcggtcttg
ccgacgggcgggggcaagaccttcactttttggttgccggcagttattcaggcatccagt
tataaagcccttaccgtggtaatatctcccttgcaagcgctcatagaggaccatatcaaa
agtttcgaaaacaaggccgccaattaccgggctgtggccatcagcggcttcatgacacca
caggagcgtagtgaagctatagaacaggttgccaacggtgtggcggatattttatacatc
gctcctgaatctctacgctccaatacaattttttctctactaaaaaaccgctatatcgag
cgtttcgtcgttgatgaggcccactgtctatccacctggggaaacgactttcggcaggac
tatttctatatttgcgaattcattaaagatctgctggcggcaaaatcttttcaggagaga
attcccgtctcatgtttcaccgctaccgccaagcctagtgtcatcgacgatattaaaaac
tactttcaagaagggcttggattggaaatggaagagtttctagccaaaccggagcgcaat
aaccttcactatcgtgctcttgaggcacctcgtatcaaaaagtacaccgtacttcttcgg
ctgatccaggaacataggggctcctctttggtatatattcccacatccactaggcaatgc
gacgaagtggctgaaaaattggccatggacaccggaaaggcagtgcgttctttccattcc
aagctcgattctcaagagaagatgaagattctcaaggattatatagagaacgagatcgat
gtgatcgtcgccactaccgctttcgggatgggggtggataagcccgatatcactcaggta
atccacttcgaaccctccgattctctcgagaattatgcacaagaagctggacgtggtgcg
cgggatcagcacctggaggcagtctgtccggtactctacgacgaagccgatctcgataaa
cattttcaaaccctgcgccgaagcaagattaccgtagcggaaattaactccatctttcgg
gtcatcaaacaccacaaaggagatattgtactactcagcgccaaggagctggccaaagag
gcgggctgggatgttgaggatatcgaggcggatgtagagagtaagatcaagacgattctt
ctggaactggagcgcgaaggctatatccggagaaaacgcaacaaagtacgattttacggt
gattcagtagcagtagagagccgtgataaactgtatgcgtttatagagcggaaccacaaa
agtgacgaggagcggtggaaatatatcgaaatactcaaccggctcctggggcagggtaaa
gagagatccatcgagatcgacgacattgctagggtgctgggtatcccccgtgaagatgta
gcgctgatcctgcaggagcttaaagaagagggtattatcggggacagccgggatatggcg
gttaagcttctgcatgaggatcttagagctttggatagagtacttaggatcgaaaaggcg
ctgctagagtttctgcgtgcttatccgggagatatagtcgccattaaagagcttaacgaa
gcactgatagagcaggggatattgtgtgataacgataacgagtcggagttgatccgagag
ctgatcaaaggatggcgaagccggggacttttcagctttactcgcatgaaccgccagcag
gatcgctggatgtatagtttcttagacgctgaacgattctccagcctgcttagtaaacgg
caaaatctagtgcgtgaacttatggtgtggcttcttgggcgaacaaccggagagggtaat
atcggcttttcacttctggagctcaaaaaagcgcttaaagagcgctacaaactcaaagag
ctggaccggggactgctttttttgcatcggcataagttcatcatgctgctcggtggtcgt
tttatctactacaaccccctggtgatcgaaaagcaggagaaaattaagattacaaacaaa
cgctacactaaagtggaatacaaacagcgtctagggacacattatcagatcaagaccgag
gcgattcatattatgggggaatatgccaatctgttgctgaacgatcccaaaaaggcgggt
aactttttgcaggattacttcactctgcgttacgatgccttcaagcgccgttataaactt
tttaaagagaccctctcgcgtcccatcaccaagcgccgctatgagcagatttttaagaag
ttaagccctgagcagcaggcaattatagccgatcagacgagccgggccatcatgattctg
gcgggtccaggcagtggaaagaccagagtgttggttcataagatcgcctctttggtgctg
accgaagatgtcaaacctgagaatttcatgatgttgacattttctcggtctgcagtgcgg
gagtttcgctcccgtttgcataagctaatcggcgatacggcatataatatggaaatcagc
actttccacgcctatgcactcaagcttatcggccgcaccgccgaaaataaccgaagggta
ttggatggttcgattgccgaagcggcccgacagatccgcgccgggcagctaaaccttccc
cacctcaaagcactggtgctggatgagtatcaggacataaacgaagcggcattcgacctg
atttcagccatcgctgagatgagtcccgatatgcgggtgattgctgttggcgatgacgat
cagtgcatcatggagtatgcgggcgccgatgtgggcttttttgagcgatttgaagagcgg
ttcgacactatggaggtggaggaggatgagcgcagtttcaccaggtatgaactgctcacc
aactaccggagcaacgcttctgttgtcaactatgccgaggcgttcatttctaaagtcagg
cgccgtttcaaggagaggcctttgattccctatcggaaagagggtaaaaaggtagaagtg
atcgactataggggaacttctctagtgcagccggctatggagtgggcgctaaagtatctg
gaggagtctgatgaggtagcgatcttggcatataccaacgacgaggttatgcggctctat
tcacttctgcgagcaaagggagttgccgcacgctatcttatagatcggccgcgcttcgag
gtgaagatgattgaagaggttgcggttttcgaccggattttgaacgagtcggtgatatcc
ggcagagaatacaaaaaagtagattttgagagggctatggagcatgtagaaaccctctat
gccgggtcgaaaaatctgcctcttctacggaaggtagtctacggttttttgaacgaaagc
gagagtctggcggcatctttctggttggagtatcttgatgagctggaactggagcccctg
gagtcagagcaggggcatgtgaccatctccactatccataaatccaaaggcctggagttc
agcagtgtcgttctgctggctcagaacccagtccaaaatgacatttaccgacgcctccat
tatgtaggtatgactcgcgccaaagatcacctgtgcatccttcatcgagacgaccgatcc
ttcctgctacccggccacgctcactacaggacaatggacgccctaccagaagagcaatgt
acctcccttatcatggttatgggcctgtcggatatatatttaggtttcaagggagctcaa
aatcgccgacacgacctacgcatcattgccggtgaggagcttctattccgccgctccagt
tatgggatctatcagatgtactataaggggcatatagtgggacaggtttcaaagaagttt
aatgaaaaactggtagagctggagacaaagggatatagaataagccgagtggttgtagac
tacgtcgtgtgctggttagatcgaaaagaaggaagggaagtaagacatgttttagggtgg
gtggagatgacgagcggtaagcctttttag
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integrated database retrieval system
