Hymenobacter psoromatis: A0257_05105
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Entry
A0257_05105 CDS
T04376
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyp
Hymenobacter psoromatis
Pathway
hyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0257_05105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyp03019
]
A0257_05105
Enzymes [BR:
hyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A0257_05105
Messenger RNA biogenesis [BR:
hyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A0257_05105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Utp25_C
AAA_22
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AMR26548
LinkDB
All DBs
Position
1201648..1203096
Genome browser
AA seq
482 aa
AA seq
DB search
MTFNELNLIEPILRALSEEGYTTPTPIQQQAIPQVLEGHDLLGVAQTGTGKTAAFSVPIL
QILHQTSLTQKAGQGPKGRIRCLVLTPTRELAIQIGESFKAYGRHLPQLRSTVIFGGVGQ
NPQVQALQRGVEILVATPGRLLDLMNQGYVHLQHLEVFVLDEADRMLDMGFIHDIKRILP
KLPAGRQSLFFSATMPNVIKELSATILRPNPVQVAVTPVSSTADTVTQSVFLVDKNDKPA
LLRHVLKDPAMKRVLVFTRTKHGANKVTETLEKAQISAEAIHGNKSQNHRQRALSNFKAG
TTRVLVATDIAARGIDVDELTHVINYEVPNEPETYVHRIGRTGRAGAFGTAFTFVEEEER
AYLQDIQKLIRRQLDIDKEHPFTTNSVAPVSLTGNERIVRPKGPAGRPARDGRGGSGSSQ
GRNGAARASGSTSGGGRSEHRGGGRPQSSGGGERAASGGGQRGSRPFQAGRGGSEGGSRR
SS
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgactttcaacgaactcaacctgattgagcccatcctgcgcgccctgagcgaggaaggc
tacacgacccccacgcccattcagcagcaagccattccgcaggtgctcgaagggcatgac
ctgctgggcgtggcccaaacgggcaccggcaaaacggccgctttctcggtgccgattctc
cagattctgcaccaaacctctctcacccagaaggccggccagggtcccaaaggccgcatt
cgctgcctcgtgctgaccccgacccgcgagctggccatccagattggcgagagctttaag
gcctatggccgccacctgccgcagttgcgctcgaccgtcatttttgggggggtagggcaa
aacccgcaggtgcaggcgttgcagcgtggcgtcgaaatcctggtggctacccccggccgc
ctgctcgacctcatgaaccagggctacgtgcatttgcagcacctcgaagtgttcgtgctc
gacgaggccgaccgcatgctcgacatgggtttcatccacgacatcaagcgcatcctgccc
aagctgccggccggccgccagagcctgttcttctcggccaccatgccgaacgtgattaag
gaattgtcggccaccatcctgcgccccaacccggtgcaggtggccgtcacgcccgtgtcg
agcaccgccgacacggtgacgcaatcggtgtttttagtggataaaaacgacaagcccgcc
ctgctccgccacgtgctcaaggaccccgccatgaagcgcgtgctggtgtttacccgcacc
aagcacggcgccaacaaagtgaccgagacgctggaaaaagcccagattagcgccgaggcc
atccacggcaacaagagccagaaccaccgtcagcgggcgctcagcaacttcaaggccggc
actacccgcgtgctggtcgccaccgacattgccgcccgcggcatcgacgtggatgagctg
acgcacgtcatcaactacgaagtgcccaacgagcccgaaacctacgtgcaccgcattggc
cgcacgggccgggccggcgcgttcggcaccgcgtttacatttgttgaggaagaagaacgc
gcgtatctgcaagatattcagaagcttatccgccggcagctagacattgacaaggagcac
ccctttactacaaacagcgtggcaccggtttcgctgacgggcaatgagcgcattgtgcga
cccaaaggcccggctggccgcccagcccgcgacgggcgtgggggcagcggcagtagccag
ggccgtaacggcgcggcgcgcgccagcggttctacctcgggtggtggccgcagtgagcac
cgcggggggggtaggccgcagtcgtcgggcggcggcgagcgggctgcttccggcggtggc
cagcgcggcagccggcccttccaggccgggcgcgggggtagcgaaggtggcagccgccgc
tccagctag
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