Hymenobacter psoromatis: A0257_05215
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Entry
A0257_05215 CDS
T04376
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hyp
Hymenobacter psoromatis
Pathway
hyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0257_05215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyp03019
]
A0257_05215
03009 Ribosome biogenesis [BR:
hyp03009
]
A0257_05215
Enzymes [BR:
hyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A0257_05215
Messenger RNA biogenesis [BR:
hyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A0257_05215
Ribosome biogenesis [BR:
hyp03009
]
Prokaryotic type
rRNA helicases
A0257_05215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMR26565
LinkDB
All DBs
Position
complement(1229591..1231582)
Genome browser
AA seq
663 aa
AA seq
DB search
MDTEQVENTPAKNTEKPKVRFDELNLSPEVQRAITEMGYEEASPIQSAAIPVLLAGKDVI
GQAQTGTGKTAAFAIPAIEGVDGESRDVQVIVLCPTRELAVQVSGEIQKLGKYKKGLAVV
PIYGGSSYDRQFRALERGVQIVIGTPGRVMDHIERGTLKLDKATKIILDEADEMLDMGFR
EDIEFVLSKMPENRQTVFFSATMSKPIMDMTKKYQRDPQVVKVNHQQMTVSNIEQSYFEV
RGPQKKDVLTRVMDMYNLKSTIIFANTKRMVDEIVADLQAKGYFADGLHGDMSQVQRQNT
LDKFRKNTLEILVATDVAARGIDVDNVEAVFNYDLPADEEYYVHRIGRTGRAGKSGRAFT
FVSGRDIYKLRDIMRFTKADIKLAQVPSFADVSEVKTTLFLNQIKEVVEKGNLDKYIGRV
QRLLDQSEETTSLDIAAALLKMNMKEDKRNEQSLDASREKGATRPGYTRLFISMGKKDRL
HPRDVVDLIGESTNLPGNKVGDIALYDKFSFVEVPNEFAEEIVGQLGRSSIQGQPVTFSI
ATPVQDAAAKEEGTNRPERREGGFGGERRGGFGGGDRREGGRPPFGGGNRGGSSYGGDRR
EGGSSYGGGYKGGDRREGGGSSYGGDRGGSSQGGGYQRGGYKGGQGGGSSYGGGYKGKRE
SGE
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggataccgaacaagtagaaaatacccccgctaaaaacaccgagaagcctaaagttcgt
tttgacgagctcaacctctcgcccgaagtgcagcgcgccattactgaaatgggttacgag
gaagcctcgcccattcagtcagccgccattccggtactgctcgctggcaaagacgttatc
ggccaggcccagacgggtaccggcaaaacggctgcttttgccattcccgccattgaaggt
gtggacggcgaaagccgtgacgtacaagtgattgtgctttgccctacccgtgagcttgcc
gtgcaggtttcgggcgaaatccagaagttgggtaagtataagaaaggcctggccgtagtg
cccatttacggcggctcgtcgtacgaccggcagtttcgcgctctggagcgcggtgtgcaa
attgtaatcggcacgcccggccgcgtaatggaccacatcgagcgcggcacgctgaagctc
gataaggcgaccaaaatcatcctcgacgaagccgacgaaatgctcgacatgggcttccgg
gaggatatcgagtttgtgctcagcaagatgcccgagaatcgccagacggtgtttttctcg
gccacgatgagcaagccgattatggatatgaccaagaagtaccagcgcgacccgcaggta
gtgaaggtcaaccatcagcaaatgacggtgtccaacatcgagcagagctacttcgaagtg
cgtggcccgcagaagaaggacgtcctgacccgcgtcatggacatgtacaacctgaaatcg
accatcattttcgctaatacgaagcgcatggtggacgaaattgtggccgacctgcaagcc
aaaggctacttcgccgacggcctgcacggcgacatgagccaagtccagcgccagaacacg
ctcgataaattccgcaaaaacacgcttgaaatcctggttgctaccgacgtagccgcccgt
ggtatcgacgtagacaacgtggaggccgtattcaactacgacctgcccgccgacgaagag
tactacgtgcaccgcatcggccgcaccggccgcgctggcaagagtggccgcgccttcacc
ttcgtgagtggccgcgacatctataagctgcgcgacatcatgcgcttcaccaaagccgac
atcaagctggcgcaagtgccgtcgttcgccgacgtgtcggaagtgaagacgaccctcttc
ctcaaccagattaaggaagtagtagagaagggcaacctagacaagtacatcggccgcgtg
cagcgcttgctcgaccaaagcgaggaaaccacctcgctggacatcgctgctgcgctgctc
aagatgaacatgaaggaggataagcgcaacgagcaaagcctcgacgccagccgcgagaaa
ggtgctacccgccccggctacacccgcctgttcatcagcatgggcaagaaggaccgcctg
catccccgcgatgtagtcgatttgattggtgaaagtaccaacctgcccggcaacaaagtg
ggcgacatcgccctgtacgacaaattcagcttcgtagaagtgccaaacgagtttgccgaa
gagattgtgggccagcttggtcgcagcagcattcagggccagccggttacgttcagcatc
gctaccccggtgcaggacgcggccgccaaggaagaaggcaccaaccgtcccgagcgccgc
gaaggtggcttcggcggtgagcgtcgcggcggcttcggcggcggcgaccgccgcgaaggt
ggccgcccgccgtttggtggtggcaaccgcggtggcagcagctacggcggcgaccgtcgt
gaaggcggcagttcctatggtggcggttacaaaggcggtgaccgccgcgaaggtggcggt
agcagctacggcggcgaccgaggtggtagtagccagggcggtggttaccagcgtggtggc
tacaaaggtggccaaggcggtggcagcagctacggcggcggctacaaaggcaagcgcgaa
tcaggcgaatag
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