Hymenobacter psoromatis: A0257_06040
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Entry
A0257_06040 CDS
T04376
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hyp
Hymenobacter psoromatis
Pathway
hyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0257_06040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyp03019
]
A0257_06040
03400 DNA repair and recombination proteins [BR:
hyp03400
]
A0257_06040
Enzymes [BR:
hyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0257_06040
Messenger RNA biogenesis [BR:
hyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A0257_06040
DNA repair and recombination proteins [BR:
hyp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A0257_06040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
HTH_40
RecQ_Zn_bind
ResIII
HTH_IclR
HTH_35
Sigma70_r4_2
HTH_29
LpxK
GARS_N
TraK_C
Motif
Other DBs
NCBI-ProteinID:
AMR26710
LinkDB
All DBs
Position
complement(1419743..1421986)
Genome browser
AA seq
747 aa
AA seq
DB search
MPELAPAPALTAAHQALKRYYGYDNFRPMQGDIIQHILGGRDTVVLMPTGGGKSVCFQIP
AVVSEGVCVVVSPLIALMKDQVEALKANGIVAAYLNSSVGQSEANDIARAAVSGHLKLLY
VSPEKLLSEGFLQFLTRVNISIFAIDEAHCISSWGHDFRPEYTQLGALRTHFPSVPIIAL
TATADRLTQRDIRTQLNLHEPKVFLSSFDRPNINLVVRPGQDRIGQILDYIQRHPTEAGI
IYCLSRKSCETIAQKLQQKGIKAGYYHAGMSPNQRAEAQEKFLQDDMQVIVATIAFGMGI
DKSNVRWVMHYNLPKNIEGYYQEIGRAGRDGSPATALLFYSFADVMSMRDMVTRDVPARQ
AQLNTAKLERMQQFAEAASCRRRILLHYFSEDLGHDCGNCDICRNPPTTFDGTLLAQKAL
SASTRAQQRVAINLLIDILRGMRNQAVLQGGYDQLKTYGAGQDLPYLDWHSYVHQMLNDG
LFYIAYEEGYALKITERGQQVLKGQLPVSLKKFQVAEKAEKQTRATKKAAADAAAAGAGT
PEARLFERLRQLRKQIADEQGVPPYVVFTDTTLQEMAREQPTSRVAMLSVSGVGMKKFET
YGEAFMEAIIQHGPPRPVPTEDEAGDLPGIPPFTDDYAPKKDKSVPAKGATEEATVELHR
QGLNLAQIAQQRGLALSTVQGHLERAYAKGLDLRLHEFLSDSDLAAIAAARAQLGPGAGL
RDLFDHLREKYDYFQLRLAGIRAQRGR
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactcgcccctgctcctgctctcaccgccgcccaccaggccctcaagcgctac
tacggctacgataatttccggcccatgcagggcgacatcatccagcatattctggggggt
agggataccgtcgtgctcatgcccaccggcggcggcaagtcggtctgcttccagattcca
gccgtggtgagcgagggcgtgtgcgtggtggtgtcgccgctcatcgccctcatgaaagac
caggtggaagcgctgaaagccaacggcatcgtggcggcctacctcaacagcagcgtgggc
cagagcgaggccaacgacattgcccgcgccgccgtgagcggccacctcaagctgctctac
gtgagccccgaaaagctgctgagcgagggctttttgcagtttctgacgcgggtcaatatc
agcatttttgccattgatgaggcgcactgtatttcgagctggggccacgattttcggccc
gaatacacgcagctcggcgcgctgcgcacgcactttccgagcgtgcccatcatcgcgctc
acggccacggccgaccgcctcacgcagcgcgacattcgcacccagctcaacctgcacgag
cccaaagtatttctgtcgagcttcgaccggcccaatatcaacctcgtggtgcgccccggc
caggaccgcatcggccagatactcgactacattcagcgccaccccaccgaggcgggcatt
atctattgcctctcgcgcaagagctgcgaaacaattgcgcaaaagcttcagcagaagggt
attaaggccggctactatcacgccggcatgagccccaaccagcgcgccgaagcccaggaa
aaattcctgcaggacgatatgcaggtcattgtggccaccatcgctttcggcatgggcatc
gacaagagcaacgtgcgctgggtgatgcactataatttgcccaaaaatatcgagggctac
taccaggaaatcggccgcgccgggcgcgacggttcgccggccacggccctgctgttttac
agcttcgccgacgtcatgtccatgcgcgatatggtaacccgcgacgtgcccgcccgccag
gcccagctcaacaccgccaagctggagcggatgcagcagtttgccgaagccgccagctgc
cgccgccgcattttgctgcattatttttccgaagacctgggccacgactgcggcaactgc
gacatctgccgcaacccgcccaccaccttcgacggcacgctattggcccaaaaggcgctc
tcggccagcacccgcgcccagcagcgggtcgccattaatttgctcattgatattctgcgc
ggcatgcgcaaccaggccgtgctgcagggcggttacgaccagctcaaaacctacggcgcg
ggccaggatttgccttacctcgactggcacagctacgtgcatcagatgctcaacgacggc
ctcttttacattgcctacgaggaaggctacgccctcaaaatcaccgagcgcggccagcag
gtattgaagggccagctgcccgtgtcgctcaagaaattccaggtagccgaaaaggccgag
aagcaaacccgcgccactaaaaaagccgccgccgatgccgctgcggccggcgccggcacg
cccgaagcccggctcttcgagcgcctgcgccagctgcgcaagcagattgccgacgagcag
ggcgtgccgccttacgtggtcttcaccgacacgaccctccaggaaatggcccgcgaacag
cccaccagccgcgtggccatgctctcggtgtcgggggtagggatgaagaaattcgaaacc
tatggcgaggcatttatggaggccattatccagcacggcccgccgcgcccggtgcccacc
gaagacgaggctggtgacttgcccggcattccgcctttcaccgatgactacgcgcctaaa
aaggataaatcggttcccgccaagggcgcgaccgaagaagccaccgtggagctgcaccgc
cagggcctgaatctggcgcagatagcccagcagcgcggcttggccctgagcaccgtgcaa
ggccacctggagcgggcctacgccaagggcctcgacttgcgcttgcacgagtttctgagc
gattctgacctggccgccattgccgccgcccgtgcccagcttggccccggcgcgggcctg
cgcgatttattcgaccacctgcgcgagaaatacgactattttcagttgcggctggcgggc
atccgggcgcagcgcgggcggtag
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