KEGG   Hymenobacter psoromatis: A0257_12920
Entry
A0257_12920       CDS       T04376                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
hyp  Hymenobacter psoromatis
Pathway
hyp03030  DNA replication
hyp03410  Base excision repair
hyp03420  Nucleotide excision repair
hyp03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hyp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A0257_12920
   03410 Base excision repair
    A0257_12920
   03420 Nucleotide excision repair
    A0257_12920
   03440 Homologous recombination
    A0257_12920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hyp03032]
    A0257_12920
   03400 DNA repair and recombination proteins [BR:hyp03400]
    A0257_12920
Enzymes [BR:hyp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     A0257_12920
DNA replication proteins [BR:hyp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A0257_12920
DNA repair and recombination proteins [BR:hyp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     A0257_12920
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A0257_12920
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 DNA_polI_exo1 HHH_2 HHH_5
Other DBs
NCBI-ProteinID: AMR27900
LinkDB
Position
complement(3058993..3061881)
AA seq 962 aa
MSEPTAAPAKKLFLLDAFALIYRSHFAFAKNPRINSKGMNTGAVLGFTNTLVEVLLKEKP
THIGVCFDAGKTFRHEKDENYKANRQAMPEDIGIAIPYIKQVVDAFRIPILLQAGFEADD
VIGTLAQRAEAAGFEVFMMTPDKDYCQLVTENIKIYKPAFMGNAAEVLDVAHVLARFEIE
RVEQVIDILGLQGDASDNIPGIPGIGEKTAKTLIQKYGSVENLIANVDELKGKQQENVRN
FAEQGLLSKELATIHVNVPIDFEPDKLLLEAPDAPRLRALFEELEFRQLAVRVLGTDAVA
GGSRPPAGPVGRGARRPKVAAPAGQGSLFGEGSAGVIIAAENGEFLPGEAGAEYHGTTKT
LADVPHQYHLVNTPELRKSLLAFLLQQMEVSFDTETTGLNTMTARLVGLSFSWLAGEAYY
VPVPQNDTAQALIEEFCPFFESGILKIGQNIKYDLLMLKNYRVRVNGPFFDTMLAHYLIE
PDMRHNMDVLAETYLHYSPVPITDLIGPKGKNQKTMADLDPAAVSDYACEDADVTLQLRH
VFEPMLKDLGLLELLNEVENPLVPVLAAVEFAGVKIDSAAMTEYSAELQGYVQELETQIY
KEAGQEFNIGSPKQLGEVLFDKMDIGRGKIKKTKTGQYATGEEILSQLAADNPIAGLILE
YRQLSKLRSTYVEALPQLVSPVDGRVHTSFNQAVTATGRLSSTNPNLQNIPIRTEKGREI
RKAFVPRDAGHLLLAADYSQVELRIMADFSGDKTMIEAFRLGQDVHASTASKVFHVPINE
VDGEMRRKAKTVNFGIIYGISAFGLAQRIGISRKEATDIIDTYFQEFPSVKQFMDDSINR
ARELEYAETLLKRRRYLRDINSRNATLRGYTERNAINAPIQGTAADIIKKAMINIHAWLE
QERLGTKMILQVHDELVFDAVQEEVEFITPKIRELMTQALLLPRGVPLEVEVGVGDNWLK
AH
NT seq 2889 nt   +upstreamnt  +downstreamnt
atgtctgaacccaccgccgcgcccgccaaaaagctgtttctgctcgacgcttttgccctg
atttaccgctcgcacttcgcctttgccaagaacccgcgcatcaactcgaagggaatgaac
accggggccgtgctgggcttcacgaacacgctggtggaggtgctgctcaaggaaaaaccc
acccacatcggcgtgtgcttcgacgccggcaagaccttccggcacgagaaggatgagaac
tacaaggccaaccgccaggccatgcccgaggatatcggcattgccattccttatatcaag
caggtggtggatgcattccgcatcccgattctgctgcaagccggctttgaggccgacgac
gtaatcggcacgctggcgcagcgggcggaggcagctggtttcgaggtgtttatgatgaca
cccgacaaggactattgccagttggtgacggaaaacatcaaaatctacaagccagccttc
atgggcaacgccgccgaggtgctcgacgtggcgcacgtgctggcccgcttcgagattgag
cgcgtggagcaagtcattgatattctgggcttgcagggcgacgcgagcgacaacattccc
ggcattccgggcatcggcgagaagacggccaagacgctaattcagaagtacggctcggtc
gaaaacctgattgctaatgtggacgaactcaagggtaagcagcaggaaaacgtgcgcaac
ttcgccgagcaaggccttttgagtaaggagctggcgacgattcacgtcaacgtgccgatt
gattttgagccggataagctcctgctggaagcacccgatgccccgcgcctgcgggcgctg
ttcgaggagttggaattccggcaattggccgtgcgggtgctgggcaccgacgccgtggcg
gggggtagccgcccgccggccgggccggtggggcgcggggcgcggcggccgaaagtagcg
gccccggcgggccagggctcgttgtttggtgagggtagcgcgggcgtcatcatcgcggcc
gaaaacggcgagttcctacccggcgaggcgggcgcggagtaccacggcacgaccaaaacg
ctggccgacgtgccgcaccagtaccacctggtaaatacgccggaattgcgcaagtcgctg
ctggcgttcctgttgcagcagatggaagtgagcttcgacaccgaaactaccggcctgaac
actatgacggcgcggctggtggggctgagtttcagctggctcgcgggcgaggcgtactac
gtgcccgtgccgcagaacgacaccgcccaggcactgatagaggaattctgtccatttttc
gagagcgggattctgaaaatcgggcagaacattaagtatgatttgctgatgctcaagaac
taccgggtgcgggtgaacgggccgttcttcgacacgatgctggcccactacctcatcgag
cccgacatgcgccacaacatggacgtgctggctgaaacctacctgcactactcgccagtg
cccatcacggacctcatcggccccaagggcaagaaccagaaaacgatggccgacctcgac
cctgccgccgtcagcgactacgcctgcgaagatgccgatgtgaccttgcagctgcgccac
gtcttcgagccgatgctcaaggatttgggcttgctggaattgctgaacgaggtagaaaac
ccgctggtgccggtgctggccgctgtggaatttgccggcgtgaagattgactcggcggcc
atgaccgagtactcggctgagctgcaaggctacgtacaggagctggaaacgcagatttat
aaggaggccgggcaggagttcaacatcggctcgcccaagcagctcggcgaggtgctgttc
gataaaatggacatcggccggggcaaaatcaagaaaaccaaaaccggccagtacgccacc
ggcgaggaaatcctgagccagctcgcggccgacaatcccatcgcgggcctcatcctggaa
taccgccagctcagcaagctgcgcagcacctacgtggaggccctaccccaactcgtgagc
cccgtggatggccgcgtgcacaccagcttcaaccaggccgtgacggccaccgggcgctta
tccagcaccaacccgaacctgcaaaacatccccatccgcaccgagaagggccgcgaaatc
cgcaaagccttcgtgcccagggatgccggccatctgctattagctgccgactactcgcag
gtggagctgcgcatcatggccgatttttcgggtgataaaaccatgattgaagccttccgg
ctgggccaggacgtgcacgccagcaccgccagcaaggtttttcacgtgcctattaatgaa
gtagatggcgagatgcgccgcaaggccaagaccgtgaacttcggtatcatctacggcatc
tcggcctttggcctggcgcagcgcatcggcatcagccgcaaggaggccacggatattatt
gacacctatttccaggaattcccgagcgtgaagcagttcatggacgacagcatcaaccgc
gcccgcgagctggaatacgccgaaaccctgctcaagcgccgccgctacttgcgcgacatc
aactcgcgcaacgccaccctgcgcggctataccgagcgcaacgccatcaacgcccccatc
cagggcacggccgccgacatcatcaaaaaggcgatgataaacatccacgcctggctggaa
caggagcgcctgggcaccaagatgatactgcaagtccacgacgaactcgtgttcgatgcc
gtgcaggaggaagtggaatttattacgcccaaaatccgcgagctgatgacccaggcgcta
ctgctaccccgcggcgtgccgctggaagtggaggtgggggtaggggataactggctgaag
gcgcattag

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