Hymenobacter psoromatis: A0257_16100
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Entry
A0257_16100 CDS
T04376
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hyp
Hymenobacter psoromatis
Pathway
hyp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A0257_16100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyp03021
]
A0257_16100
03400 DNA repair and recombination proteins [BR:
hyp03400
]
A0257_16100
Enzymes [BR:
hyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A0257_16100
Transcription machinery [BR:
hyp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A0257_16100
DNA repair and recombination proteins [BR:
hyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A0257_16100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AMR28461
LinkDB
All DBs
Position
3771257..3775612
Genome browser
AA seq
1451 aa
AA seq
DB search
MAFAKNKKLVQDFSKVTISLASPEGILERSTGEVVKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVVQPGVQAEEGVQQLDFLTEDEYLDIIDKLPRENQMLPN
EDPQKFIAKMGADALQMLLERINLDELSYSLRDSAAHETSQQRKAEALKRLRVVEAFRDA
ATRVENRPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDA
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPRLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGPAAILEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVTKGKRSTEGESIQ
GEGRAFYSDEEVVIALNEKQLSKHAYIKVRTMIRDENDDLVQKTIETVAGRVLFNQLVPA
EVGFVDELLTKKKLQQIISMVFKRTGMARTAQFLDDIKTLGFQSAYKGGLSMGLGDIQIP
KEKDILIKQAQADVAAVMQNYQMGLITNNERYNQVIDIWTRINSQITETLMGRLEKENQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTAMKTADAGYLTRRLVDVSQDVIVNEPDCGTLRGTETFALKDNEDI
VEPLAERILGRTAVHDIIDPLTDELILASGEQITEEITRRIDATSIESVEIRSVLTCESK
RGICGKCYGRNLATGRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVEANIR
AKFAGIVEFEDIRTVAGVNFEGAKTNVAMGRSGEVRIVEKGTGKVFISNHVPYGSFLLAK
EGQEVEKGQELVNWDPYNAVILAEFDGTIQYDALTEGITYREETDEQTGFREKVIVESKD
KAQNPSVLLHPAKGADADSARSYSMPVGAHLNVENGVKVKAGHILAKIPRAVGKTRDITG
GLPRVVELFEARNPSNPAVVSEIDGVVTYGSVKRGNREIFVESKDGVKRKYMVPLSKFIL
VQDNDFVRAGSPLSDGAITPSDILNIQGPSSVQQYLVNEIQEVYRLQGVKINDKHIEVIV
RQMMQKVLVMDAGDTSFLENQLVDKVLLMEENDIVIDMKVVTDAGDSSEFRPGQIISSRK
LRDENSSLRRRDLKLAEVRDAQPAVSRPTLQGITQASLGTASFISAASFQETTKVLSEAA
IRGKADELLGLKENVIVGHLIPAGTGLREYQGIEVSSKEDHATRQAAQAAEQAVVPAKRP
SRAKRETTVQE
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atggctttcgcaaaaaataagaaattagtccaagacttctctaaggttactatctcgctt
gcttctcccgaaggaattctggagcgcagcacaggcgaagtagttaagcctgagacgatt
aactaccgcacatataagcccgaaatgggcggcctattctgcgaacggattttcggcccg
gtgaaggactgggagtgccattgcggcaaatacaagcgcattcgctacaagggcattatc
tgcgaccgttgcggcgtggaggtgaccgagaagaaggtgcgtcgggagcgcatgggccac
atcgaactggtggtgcctgtagcccatatctggtacttcaagagcctgccgaacaaaatc
ggctacctgttgggcttgcccaccaagaagctcgaccagattatatactacgagcgctac
gtagtggtgcagcccggcgtgcaagccgaagaaggtgtgcagcagctcgacttcctcact
gaagacgagtacctggacatcatcgataagctgccccgcgagaaccagatgctgcccaac
gaggacccgcagaagttcatcgccaagatgggtgccgacgcgctgcaaatgctgctcgaa
cgcatcaacctcgacgaactgagctactcgctccgcgactcggccgcgcacgaaacttcg
cagcagcgtaaggctgaggcgttgaagcgtttgcgcgtggtagaagcttttcgtgatgcc
gctacccgcgtggagaaccgccccgagtggatggtaatccgcatggtgccggttatcccg
cccgaactgcgtccgctcgtgccgttggatggtggccgtttcgccacttctgacttgaac
gacctgtaccgtcgcgttatcatccgcaataaccgcctcaagcgcctgattgaaatcaag
gcgccggaagtgattctgcggaacgagaagcgcatgctgcaagaggccgtcgattcgctc
ttcgacaactcgcgtaaggtgaacgccgtgcgcgccgaaggtaaccgcgcgctaaagtcg
ctgtccgatatgctgaaaggcaagcagggccgcttccgtcagaacctgctcggtaagcgg
gttgactattcgggtcgttcggtaatcgttgttggtcctgagttgaagctgcatgagtgc
ggcctacccaagaatatggcggccgaactgttcaagccgttcatcatccgcaagctcatt
gagcgcggtatcgtgaagacggtgaagtcggccaagaaaatcgtggaccgcaaggatgcc
gtggtttgggacattctggagaacgtgctgaaaggccacccagtgctcctcaaccgtgcc
cctaccctccaccgtttgggcattcaggctttccagccgcgcctcatcgagggcaaggct
attcagttgcacccgctcgtttgtacggctttcaacgctgactttgacggtgaccagatg
gctgtgcacgtgccccttggaccagctgctatcctggaagcctcgatgctcatgctggcg
tcgcacaacatcctgaaccccgccaacggcgcgcccatcgcggtgccgtcgcaggacatg
gttctgggtctatactacgttaccaaaggcaaacgctccacggaaggcgaaagcattcag
ggcgaaggccgggcgttctactctgacgaagaggtagttatcgccctcaacgaaaagcag
ctgtcgaagcacgcctatatcaaggtgcgcacaatgattcgcgatgagaatgacgacctc
gttcagaaaactatcgaaaccgttgctggccgcgtgctcttcaaccagctcgtgcccgcc
gaagtaggtttcgtagatgagttgctgaccaagaaaaagcttcagcaaatcatctcgatg
gtgttcaagcgcacgggtatggcccgcaccgcgcagttcctggacgacatcaagaccctt
ggcttccagtcggcctacaaaggcggtctgagcatgggtctgggtgatatccagattcca
aaggagaaagacattctcatcaagcaggcgcaagccgatgtagctgccgtaatgcagaac
taccagatgggtctgattacgaacaatgagcgatataaccaggtaattgatatctggacg
cgtatcaactcgcagattacggagacgctgatgggccgcctggaaaaggagaaccaaggc
ttcaactctatctacatgatgatgcactcgggcgctcgtggctcgcgggagcagattcgc
cagctcggcggcatgcgcggcctgatggccaagccccagaagtcgctgcaaggctcggta
ggcgagattatcgagaacccgattctgtcgaacttcaaagaaggtctcgacgtaatcgag
tactttatctcgactcacggtgcacgtaaaggtctggctgacacggccatgaaaacggcc
gacgccggctacctgacgcgtcgtctggttgacgtatcgcaggacgttatcgtgaatgag
ccggactgcggcacgttgcgcggtaccgaaaccttcgctctaaaagacaacgaagacatc
gtggagccgctggctgagcgtatcctcggtcgcacggccgtgcatgatatcattgacccg
ctgaccgacgagctgattctggcttccggtgagcaaatcacggaggaaatcacgcgccgc
atcgatgctaccagcattgagtcggtagagattcgctccgtactgacttgcgaaagcaag
cgtggtatctgcggcaagtgctatggccgtaacctggcaacgggtcggatggtgcagaaa
ggagaggccgttggcgtcatcgcggcccagtcgattggtgagcccggcacgcagctaacg
ctccgcacgttccacgtaggtggtacggcttcaaacattgccgtggaagctaacatccgc
gccaagtttgcgggtattgtcgagtttgaagacatccgtaccgtagctggcgtcaacttc
gaaggagcaaaaaccaacgtggcaatgggccgttcgggcgaagttaggattgtggagaaa
ggcactggtaaagtgttcatctccaatcacgttccgtatggctcgttcctgcttgctaaa
gaaggccaggaagtggagaaaggtcaggaactcgtaaactgggacccgtacaacgcggta
atcctggccgagttcgatggcactattcagtacgacgccctcacggaaggcattacgtat
cgtgaggaaactgacgaacagacgggctttcgcgagaaagtaatcgttgaatcgaaagat
aaagcgcagaacccgtcagtattgctgcacccggcaaaaggtgccgatgccgattcggct
aggtcttatagtatgccggtaggcgctcacttgaacgtcgagaacggcgtgaaggtgaaa
gccggccacattctggcgaagattccgcgggccgtgggcaaaacccgtgacatcacgggc
ggcctaccccgcgttgtggagctcttcgaagcgcgtaacccgtcgaacccggccgttgtg
tcggaaatcgatggggtagtaacctacggttcggtaaaacgtggcaaccgcgaaatcttc
gtggagtcgaaagacggcgtgaagcggaagtacatggtgccactttcgaagttcatcctc
gtgcaggacaacgacttcgtacgggccggttcgccgctctctgacggtgccatcaccccg
agcgatatcctgaatattcagggtcccagctcggtgcagcagtacctcgtgaacgagatt
caggaggtgtaccgcttgcagggtgtgaaaatcaacgacaagcacattgaagttatcgtc
cgccagatgatgcagaaagtgcttgtgatggacgccggcgacaccagcttcctcgaaaat
cagctcgtagataaggtgctgctgatggaagagaacgacatcgttatcgacatgaaagtc
gtgactgatgctggtgattcttcggaattccgtccgggtcagattatctcctctcgtaag
ctgcgcgacgaaaactcgtcgctccgccgtcgcgaccttaaactcgcggaagtgcgtgac
gctcagcccgccgtatcgcgtcctaccctccagggtatcacgcaggcttcgttgggtacg
gcttcgttcatctcggccgcttccttccaggaaacgaccaaggtgctgagcgaggccgcc
atccgtggcaaagccgacgagctgttgggcttgaaggagaacgtaatcgttggtcacctc
atccccgccggtactggcttgcgcgagtatcaaggtatcgaggtatcttcgaaagaggac
catgctacccgccaggccgctcaggctgccgagcaggccgtggtccctgccaagcgtccc
tcgcgcgccaagcgtgagacgaccgtgcaggaataa
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