Hymenobacter psoromatis: A0257_16900
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Entry
A0257_16900 CDS
T04376
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hyp
Hymenobacter psoromatis
Pathway
hyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0257_16900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyp03019
]
A0257_16900
03400 DNA repair and recombination proteins [BR:
hyp03400
]
A0257_16900
Enzymes [BR:
hyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0257_16900
Messenger RNA biogenesis [BR:
hyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A0257_16900
DNA repair and recombination proteins [BR:
hyp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A0257_16900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
BCDHK_Adom3
Helicase_Sgs1
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AMR28611
LinkDB
All DBs
Position
complement(3933081..3935291)
Genome browser
AA seq
736 aa
AA seq
DB search
MPLTAVEEPVAAHPELKTKLKEVFGFGQFRGTQEAVIQNILAGNNTFVIMPTGAGKSLCY
QLPALVLPGTAIVISPLIALMKNQVDQLSAFGVNAQVYNSTLTKTEMNRVKKDVIAGTVR
LLYVAPESLSKEDTIAFLQKTSISFVAIDEAHCISEWGHDFRPEYRKIRGIIDNLGGRIP
LIALTATATPKVQLDIQKNLHMDDANVFKTSFNRTNLYYEVRAKRNTKKQLIQYVQSHKG
KAGIIYCLSRKKVEEVAELLRVNDVRALPYHAGLDPHTRMNNQDAFLSEDCDVIVATIAF
GMGIDKPDVRFVIHYDAPKSIEGYYQETGRGGRDGMEGNCLMFYSYDDILKLEKFSKDKP
VTERDNARQLLLEMTNYSESAVCRRRQLLHYFGEHMDQDCGFCDNCRHPKEKFEGREHVG
LALRAVVQTEARFGLDHVAQVLLGLSNPHIESYGHTGLPVYGQGKALSGDMQLWQSVLRQ
CLLSGLLAKDIDSIGLVHITPKGIDFIENPQPFTLIKDHDFEAEKQEEEDGEKIQQAAGH
DEALFAQLKELRKQLAKQKNLPPYVLFQDPSLKEMATTYPQTLHELTHISGVGQGKAQKF
GAPFAAAIKQYVEDNDIETAADVVIKSTVNRSKLKIYIIQQIDKKMDLPGIARSQGISMT
DLMEEIEHICYSGTRLNLNYYIREAVDEDKQSEIFDYFMTAATDSIATALAELGTDDFSE
EEVRLMRIKFLSEVAN
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgccactgaccgccgtcgaagaaccagttgccgcgcaccccgaactcaaaaccaagctc
aaggaagtctttggctttggccaattcaggggcactcaagaggctgttattcagaatatt
ttagctggcaataacacgttcgtgattatgcccacgggggccggcaaaagtctgtgctac
cagctgccggctttggtgctgccgggcacggccatcgtcatttcgccgctcatcgccctg
atgaaaaaccaggtggaccagctttcggccttcggcgtgaacgcgcaggtgtacaattcg
acgctgaccaagacggagatgaaccgcgtcaaaaaggacgtaatagcgggcacggttcgc
ctcttatacgtggccccggaaagcctgagcaaggaggatactattgcttttctccaaaaa
accagcatctcgttcgtggccatcgacgaggcgcactgcatctcggaatggggccacgac
ttccggcccgagtaccgcaagattcgcggcatcatcgacaacctggggggtaggattccg
ctcatcgcgctcacggccacggccacgcccaaggtgcagctcgacatccagaaaaacctg
cacatggatgatgcgaacgtgttcaaaaccagctttaaccgcaccaacctctactatgag
gtgcgcgccaagcgcaacaccaaaaagcagctcatccagtacgtgcagtcgcacaagggc
aaggcgggtattatctactgcctgagccgcaaaaaagtggaggaagtggctgagctgctg
cgcgtgaacgacgtgcgcgccctaccctaccacgccgggctggacccgcacacgcgcatg
aacaaccaggacgcgtttctgagtgaggactgcgacgtgattgtagccaccatcgccttc
ggcatgggcatcgacaagcccgatgtgcgcttcgtgattcactacgacgcacccaagagc
attgagggctactaccaggaaaccgggcgcggcggccgcgatggcatggagggtaactgc
ctgatgttctacagctacgatgatattctgaagctcgaaaaattcagcaaggacaagccc
gtgaccgagcgcgacaacgcccggcagctgctgctggaaatgacgaactactcggagagt
gccgtgtgccgccgccgccagctgctgcattatttcggtgagcacatggaccaggactgc
ggcttttgcgacaattgccgccacccgaaggagaaatttgagggccgcgagcacgtgggc
ctggccctgcgcgcggtggtgcaaaccgaggcgcgctttgggctcgaccacgtggcgcag
gtgctgctgggcctcagcaacccgcacatcgagagctacggccacactggcttgcccgtg
tatggccagggcaaggctctgagcggcgacatgcagctctggcagtcggtgctgcgtcag
tgcctgctcagcggcttgctggccaaggacatcgactcaattggcctggtgcatatcacg
cccaagggcatcgattttattgagaatccgcagcctttcacgctcatcaaggaccacgat
ttcgaggctgagaagcaggaggaggaagacggcgagaagattcagcaggccgccggccac
gacgaggcgctgtttgcgcagctcaaggagctgcgcaaacagctggccaagcagaaaaac
ctgccgccctacgtgctcttccaggacccgagcctgaaggaaatggccaccacctacccg
cagacgctgcacgagctgacgcacatctcgggggtaggccagggcaaggcgcagaagttt
ggcgcgcccttcgcggcggccatcaagcagtatgtggaggacaacgacattgagacggcc
gccgacgtggttatcaaatcgacggtgaaccgctcgaagctcaaaatctatattattcag
cagattgacaagaagatggacctgcccggcattgcccgcagccagggcatttcgatgacg
gatttgatggaggagattgagcacatctgctactcgggcacccgcctcaacctcaactac
tatatccgcgaggcggtggacgaggacaaacagtccgagatttttgactatttcatgacg
gctgctaccgacagcatcgccacggccctggccgagctggggaccgatgatttcagcgag
gaagaagtgcggctgatgcggattaagttcctaagtgaagtagctaactaa
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