Hymenobacter psoromatis: A0257_19160
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Entry
A0257_19160 CDS
T04376
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
hyp
Hymenobacter psoromatis
Pathway
hyp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0257_19160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyp03400
]
A0257_19160
DNA repair and recombination proteins [BR:
hyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A0257_19160
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A0257_19160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
SMC_N
UvrA_DNA-bind
AAA_21
AAA_16
nSTAND1
AAA_29
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_22
AAA_33
Viral_helicase1
nSTAND3
cobW
NACHT
FtsK_SpoIIIE
PheRS_DBD1
Motif
Other DBs
NCBI-ProteinID:
AMR29010
LinkDB
All DBs
Position
4512364..4515207
Genome browser
AA seq
947 aa
AA seq
DB search
MPDNSALQMAAPAHDEIDHLDPRQFIVIKNARVHNLKNLSVALPRNKFIVVTGLSGSGKS
SLAFDTLYAEGQRMYVESLSSYARQFLGRMDKPDVDYIRGISPAIAIEQKVSIKNNRSTV
GTSTEIYDYLKLLFARVGRTYSPVSGQQVRKDSVADVVDFLFSLPPDTRVTILAPLLRTE
PGRPMSKELDLLLQKGYGRVVLADGQNAFIEDLIGEGKPEVAGDIFILIDRAVVQPGDED
LQFRLSDSVQTAFFEGHGTCVVKLDNETRTFSDKFELDGLIFEEPSVNFFSFNNSYGACH
TCEGFGSVLGIDEDLVVPDKSMTVYEGAIAPWRTEKQGEWLKPLLKHGIRFDFPIHRPYN
ELSEAEQRLLWTGNKHFEGLDAYFKWVSEQTHKIQYRVLQSRYRGRTTCPDCRGTRLRKD
AQYVRIDGRSITDLVLLPISAALTFFQTLSLSEHEMAVADRLLAEITNRLGYLDRVGLGY
LTLNRLSNTLSGGESQRISLATSLGSALVGSMYVLDEPSIGLHPKDAEQLIGVLRSLQAL
GNTVVVVEHEEKMMAAADQVIDIGPEAGSGGGHLMFQGTFAELMRDTETYTGKYLSGLLE
VPVPTTRRPWRNALELTGARENNLKNVSVKIPLGVMTVVTGVSGSGKSTLIRRILAPALM
KMLGGGAGETTGKFDRLLGVNGQVTHVEFVDQNPIGKSSRSNPVTYVKAYDTIRTLFSDQ
PLAKARGYKPSHFSFNVEGGRCEVCQGEGQVKIEMQFMADIYLTCESCGGHKFKQDVLEV
KFQDKNIYEVLDLTVEDAVEFFKGQPKVAERLQPLLNVGLGYIRLGQSANTLSGGEAQRV
KLASFLTKGATLQQDKILFIFDEPSTGLHFHDIAKLLSALNALVEQGNSVLIIEHNVDII
KCADWLIDLGPEGGLNGGHLLFEGTPEQLVKLKDTNHTARFLAEKVG
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgcctgataattccgctctgcaaatggccgccccggcccacgacgaaatagaccacctc
gacccgcgccagtttatcgttatcaaaaacgcgcgcgtccacaacctcaaaaacctgagc
gtggcgctgccccgcaataagtttatcgtcgtcacaggcctctcgggctcgggcaagtcg
agcttggcttttgataccttgtacgctgagggccagcgcatgtacgtggagagcctgagc
agctacgcccgccagtttctgggccgcatggacaagcccgacgtggactacatccggggc
atttcgccggccatcgccattgagcagaaggttagtatcaagaacaaccgctccacggtg
ggcacgagcaccgagatttacgactacctcaagctgctgtttgcgcgcgtgggccgcacg
tattcgcccgtgagtgggcagcaggtgcgcaaggattcggtggcggacgtggtggatttt
ctcttttccctaccccccgatacccgcgttaccatcctggccccgctgctgcgcaccgag
cccggccggcccatgagcaaggagttggatttgctgctgcaaaaaggctacggccgcgtg
gtactggccgatggccaaaatgctttcatcgaggaccttatcggcgaaggcaagcccgaa
gtagcgggcgatatcttcatcctgattgaccgtgccgtggtgcagcccggcgatgaagac
ctgcaattccgcctctccgactcggtgcaaacggccttctttgaaggccacggcacttgc
gtagtgaagctggacaacgagacgcgcacgttctccgataaattcgagctggacgggcta
atctttgaggagccgagcgttaacttcttctccttcaacaactcctacggcgcgtgccac
acctgcgagggcttcggctcggtgctgggtattgacgaggatttggtggtgccggataaa
agcatgacggtgtacgaaggtgccattgcgccctggcgcaccgaaaagcagggcgagtgg
ctgaagccgctgctcaagcacggcattcggttcgacttccctattcaccggccttataat
gagttaagcgaggccgagcagcgcttgctgtggactggtaacaagcactttgagggcctg
gacgcctatttcaaatgggtgagcgagcagacccacaaaatccagtaccgggtgctgcaa
agccgctaccggggccgcaccacctgccccgattgccgcggcacccgcctgcgtaaagac
gcgcaatacgtccgcattgatggccgcagcattaccgatttggtcctcctacccatctcg
gcagcgctgaccttcttccagaccctgagcctcagcgagcacgagatggccgtggccgac
cgcctgctggctgaaatcacgaaccgcctcggctacctggatagggtagggctgggatac
ctgaccctcaatcgcttaagcaacacgctgagcggcggcgagagtcagcgcatttcgctg
gctacgtcgctgggttcggcgctggtgggctccatgtacgtgctcgatgagccgagcatc
ggcctgcacccgaaggatgccgagcagctcattggcgtgctgcgctcgctgcaagcgctg
ggcaatacggtggtggtggtggagcacgaagagaagatgatggccgccgccgaccaggta
attgacattggccccgaggcgggcagtggcggcggccacctgatgtttcagggcacgttc
gcggagttgatgcgggacaccgagacctataccggcaagtacctgagcggcctgctggag
gtgccggtgcccaccacgcgccgcccctggcgcaacgcgctggagctgaccggcgcgcgc
gaaaacaacctcaagaacgtgagcgtcaagattccgctgggcgtgatgacggtggtcacg
ggcgtgtcgggttcgggcaagagcacgctcatccggcgcatcctggccccggcgttgatg
aagatgctgggcggcggcgcgggcgaaactaccggcaaattcgaccggctgctgggcgtg
aacggccaggtgacgcacgtcgagttcgtggaccagaaccccatcggcaagtcgtcgcgc
tcgaacccggtgacctacgtgaaggcttacgataccattcggacgctattttcggaccag
ccgctggccaaggcgcgaggctataagccctcgcacttctcgttcaacgtggagggcggg
cgctgcgaagtgtgccagggcgagggccaggtcaaaatcgagatgcagttcatggccgac
atctacctgacctgcgaaagctgcggcggccacaagttcaagcaggatgtgctggaagtc
aagttccaggataagaacatctacgaagtactggacttgacggtggaagacgccgtggag
ttcttcaaaggccagcccaaagtggccgagcgcctgcaaccgctgctcaacgtgggcctg
ggttacatccgcctggggcagtcggccaacacgctcagcggcggcgaggcgcagcgcgtg
aagctggccagcttcctcaccaaaggcgctacccttcagcaggataagatactattcatc
ttcgatgagccgagcacgggcctgcacttccacgatattgctaagctgctttcggcccta
aacgcgctggtggagcagggcaattcggtgctcatcatcgagcacaacgtggatatcatc
aagtgcgccgactggctcattgacctcggccccgagggcggcctcaacggcggccacctg
ctcttcgagggcacgcccgagcagctggtcaagcttaaagataccaaccacacggcgcgg
ttcctggccgaaaaggtagggtag
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