Hymenobacter psoromatis: A0257_20975
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Entry
A0257_20975 CDS
T04376
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hyp
Hymenobacter psoromatis
Pathway
hyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0257_20975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyp03019
]
A0257_20975
03400 DNA repair and recombination proteins [BR:
hyp03400
]
A0257_20975
Enzymes [BR:
hyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0257_20975
Messenger RNA biogenesis [BR:
hyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A0257_20975
DNA repair and recombination proteins [BR:
hyp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A0257_20975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
Fe_dep_repress
Motif
Other DBs
NCBI-ProteinID:
AMR29324
LinkDB
All DBs
Position
4950335..4952284
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AA seq
649 aa
AA seq
DB search
MSAPPVITTIPLDLLRQYWGHQQFRPGQQEIIEAVLAGRDALALLPTGGGKSVCFQVPAL
ARPGLCVVVTPLIALMRDQVENLRQRGLKAEAVYAGMSHQEIDQALDNCVYGRQVKFLYV
SPERLLTDLFRARVARMSVGLLAVDEAHCLSQWGYDFRPPYLRIAELRALLPPEVPCIAL
TATATAQVRQDIVEKLAFRPGYGIFTQSFARPKLSYSVLLTEDKQRRLLEVLRGVGPGKT
GIVYARTRRLAEDTAAWLSKQGLPAAAYHAGLSAEQRTRTQQNWLADKTRIIVATNAFGM
GIDKPDVRVVAHLDAPATLEAYYQEAGRAGRDGLYAFAVLLSGPADADDLRRQATLAHPP
PDVVRRVYQALANYSRTAVGGGELVAFDFDLGAFAETYRLKAVEAYQALKVLEQQGFVQL
TEAVNQPARVQLISNQEDLYRFQVANAQHDLLIKALLRLYGGELFVAFQGISESKLAQHL
RQSTTDVTRQLRYLHGAGVLHYQPRRELPQALFTTPRYDAAQLPLDERRLKAAKHLTEHQ
TKSVIDYAAGTIRCRQQTLLDYFAEPDAPACGVCDVCLARKKNRQAPADSAALPAALLEL
VRAAPLLPREVVTRYPPAEAEAVTAALRGLVELGKIAYAPDGKLRAAAR
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctccgcccgtcattaccactattccgctcgatttgctgcgccagtattggggg
caccagcagtttcggccggggcagcaggagattatcgaggcagtgttggccgggcgcgac
gcgctggcgctgctgcccaccggcggcggcaagagcgtgtgcttccaggtgccggcgctg
gcccggccgggcctgtgcgtggtcgtaacgccacttattgccctcatgcgcgaccaggtg
gaaaacctgcgccagcgcggcctcaaggccgaggccgtgtacgcgggcatgagccaccag
gaaatcgaccaggcgctggacaactgcgtctatggccgccaggttaagttcttgtacgtc
agccccgaacgactactcaccgacttgtttcgggcgcgggtagcgcgcatgagcgtgggc
ttgctggccgtggatgaggcgcactgcctctcgcagtggggctacgatttccggccgccc
tacttgcgcatcgccgagctacgggcgctgctgccgcccgaggtgccgtgcattgccctc
acggccacggccaccgcgcaggtgcgccaggatattgtggagaagttggctttccggccc
ggttacggcatttttacccaaagctttgcccggcccaagctctcgtactcggtgctgctg
accgaggacaagcagcgccggctcctggaagttttacggggggtagggccgggcaaaacc
ggcatcgtgtacgcccgcacgcgccggctggccgaagacacggccgcttggctcagcaag
cagggcctgcccgccgccgcctaccacgccggcctcagcgccgagcagcgcacccgcacg
cagcaaaactggcttgctgataaaacgcgcatcatcgtggctaccaatgccttcgggatg
ggaattgataagcccgacgtgcgggtggtggcccacctcgacgcgcccgccaccctcgaa
gcctactaccaggaggccggccgcgccgggcgtgatggcctctatgccttcgccgtgctg
ctcagcggccccgccgatgcggacgatttgcgccggcaggccacgctggcccacccgccg
cccgacgtagtgcgccgcgtgtaccaggcgctggccaactactcgcgcacggccgtgggc
ggcggcgagctggtggcgttcgatttcgacctgggcgcgtttgccgaaacctaccgcctc
aaggccgtcgaagcctaccaggccctcaaggtgctggagcagcagggcttcgtgcagctc
accgaggccgtgaaccagccggcgcgggtgcagctcattagtaatcaggaagatttgtac
cgcttccaggtggctaacgcgcagcacgatttgctcatcaaagccctgctgcggctctac
ggcggcgaactgttcgtggcttttcagggcatttcggaaagcaagctggcccagcacctg
cgccagagcaccaccgacgtaacgcgccagctgcgctacctgcacggcgcgggcgtgctg
cactaccagccgcgccgcgagctgccgcaggcgctctttactaccccccgctacgatgcc
gcccagctgccgctcgatgagcgccgcctcaaagccgccaagcacctgactgagcaccag
acgaaatctgtcattgactacgccgccggcaccatccgctgccgccagcaaacgctgctc
gactacttcgccgagcccgacgcgcccgcctgcggggtgtgcgacgtgtgcctggcccgc
aaaaaaaaccgccaagcgcccgccgattccgccgcgctgcccgccgccctgctggaacta
gtgcgcgccgcgccgctactgccccgcgaggtggtaacccgctacccccccgccgaggcc
gaagccgtgacggccgccctgcgcggcttggtggagctgggaaaaatcgcctacgcgccc
gatggcaagctgcgggcggccgctcgttaa
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