KEGG   Hyphomicrobium sp. 1Nfss2.1: HNF_2470
Entry
HNF_2470          CDS       T11703                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
hyph  Hyphomicrobium sp. 1Nfss2.1
Pathway
hyph03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hyph00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HNF_2470 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hyph03021]
    HNF_2470 (rho)
   03019 Messenger RNA biogenesis [BR:hyph03019]
    HNF_2470 (rho)
Transcription machinery [BR:hyph03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     HNF_2470 (rho)
Messenger RNA biogenesis [BR:hyph03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     HNF_2470 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 NACHT AAA_22 S1CSD-TOTE-2 AAA Fungal_virus_P2_C Spore_III_AA
Other DBs
NCBI-ProteinID: CAN1723479
LinkDB
Position
HNF:2422444..2423709
AA seq 421 aa
MKEMKLEDLKLKTPAELLSFAEEHGVENGSTMRKQELMFATLKQLAAKEVEIVGTGVVEV
LQDGFGFLRSPDANYLPGPDDIYVSPSQIRRFALRSGDTVEGVIRSPKEGERYFALLKVS
KINFEDPEATKHKINFDNLTPLYPTEWLKLETEDPTVKDLSPRVIDIVAPLGKGQRALIV
APPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPPS
RHVQVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDSNALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVSDKRVFPA
IDVSRSGTRKEDLLVPKDQLKKVYVLRRILNPMGTQDGIEFLIDKLRSTKTNGEFFQSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaaggaaatgaagctcgaagacctcaagctcaagactccagcggagctgctgagcttc
gcggaagagcacggcgtcgagaacggctcaaccatgcgcaagcaggagttgatgttcgcg
accctgaagcagcttgccgccaaagaggttgaaatcgtcggcacgggtgtcgtcgaggtg
ctgcaggacggcttcggcttcctgcgctcgcccgacgccaactacctgcccggccctgac
gacatctatgtctcgccctcgcagatccggcgtttcgccctgcgctcgggtgacaccgtc
gaaggcgtgatccgctcgcccaaggaaggagagcgttacttcgcgctcctcaaggtctcg
aagatcaacttcgaggaccccgaggcgaccaagcacaagatcaacttcgacaacctgacg
cccctctatccgaccgagtggctgaagctcgagaccgaggatccgaccgtcaaggatctg
tcgccgcgcgtgatcgacatcgtcgccccgctcggcaagggccagcgcgctctgatcgtc
gccccgccgcgcaccggcaagacggtgctgctgcagaacatcgcccactccatcaccact
aatcaccccgagtgctacctcatcgtgctgctcatcgacgagcgcccggaagaggtcacc
gacatgcagcgctcggtgaagggcgaggtcatctcctccaccttcgacgagccgccgtcg
cgccacgtgcaggtctcggaaatggtcatcgagaaggccaagcgcctcgtcgagcacaag
cgcgacgtggtcatcctgctcgattccatcacgcgtctgggtcgtgcctacaacaccgtt
gtgccgtcctccggcaaggtgctgaccggcggtgtcgactccaacgccctgcagcgcccc
aagcgcttcttcggtgcggcccgtaacatcgaagaaggcggctcgctgaccatcatcgcg
acggccctcatcgacaccggttcgcgcatggacgaggtcatcttcgaagagttcaagggc
accggtaactcggaaatcattctcgaccgcaaggtctccgacaagcgcgtctttccggcg
atcgacgtgtcccggtccggcacccgcaaggaggacctgctcgttccgaaggaccagctc
aagaaggtctacgtcctgcgccgcatcctcaacccgatgggcacacaggacggcatcgag
ttcctcatcgacaagctgcgctcgaccaaaaccaacggcgagttcttccagtcgatgaac
acctga

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