Hymenobacter latericius: OIS50_02350
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Entry
OIS50_02350 CDS
T11505
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hyq Hymenobacter latericius
Brite
KEGG Orthology (KO) [BR:
hyq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hyq03009
]
OIS50_02350 (rlmD)
Enzymes [BR:
hyq01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
OIS50_02350 (rlmD)
Ribosome biogenesis [BR:
hyq03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
OIS50_02350 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
MTS
TRAM
TRM5-TYW2_MTfase
Methyltransf_25
N6_N4_Mtase
Methyltransf_37
Cons_hypoth95
PrmA
Methyltransf_ANTKMT
PabTrmU54_TRAM_dom
Methyltransf_11
UPF0020
Motif
Other DBs
NCBI-ProteinID:
UYZ61066
LinkDB
All DBs
Position
1:complement(556923..558335)
Genome browser
AA seq
470 aa
AA seq
DB search
MPNPKKIPAEDLREVVIQDMVAEGKCLVRHNNLVIFVSGVAPGDVVDLRITKSKKSFLEA
VPVHFHKYSELRVQPFCMHFGTCGGCKWQHLGYETQLQYKQQQVEDTLQRIGKVELPEIM
PILGSKETTYYRNKLEYTFSYNGWLTSEQIADESQQYDRRVLGYHLPSRFDKIIDIQHCW
LQPDPSNQIRLAFRDYARTNNLRFGNLMKHTGLLRTLTIRTAKSTGEIMVVAAFYRQHQM
IPVILDHLLELFPEITSMNYVLNDKGNDSLDGLEVVCYKGLPYIHEEMEGLRFRVGPKSF
YQTNSEQAYELYKIARDFAGLTGTELVYDLYTGAGTIANFVAKQARKVIGVEYVAQAIED
AKLNSEINGVQNTKFYAGDMKDVLTKEFTDEHGRPDVIITDPPRAGMHADVVNRLIELRA
PRVVYVSCNPATQARDLELLADTYRVTRVQPVDMFPHTHHVENVVLLELK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgcccaatccgaagaagatccccgcggaggacctccgcgaagtggtaatacaagacatg
gtagccgagggcaagtgcctcgtgcgccacaacaacctcgtcattttcgtgtcgggcgta
gcgcccggcgacgtggtcgacctgcgcatcaccaagtcgaaaaagagctttctggaggct
gtacccgtgcactttcacaagtactcggagctgcgcgtgcagcccttctgcatgcacttt
ggcacctgcggcggctgcaagtggcagcacctaggctacgaaacccagcttcagtacaag
cagcaacaggtggaggacacgctgcagcggatcggcaaggttgagttgcccgagattatg
cccattctgggttcgaaggaaaccacctactaccgcaacaagctggagtacaccttcagc
tacaacggctggctgacctcggagcagattgccgacgagtcgcagcagtacgaccgccgc
gtgctgggctaccacctgccctcgcgcttcgataagatcatcgacatccagcactgctgg
ctgcagcccgacccgagcaaccagattcgcctggccttccgcgattacgcgcgcaccaac
aacctgcgcttcggcaacctgatgaagcacaccgggttgctgcgcacgctcaccatccgc
acggccaagagcaccggcgaaatcatggtggtggccgcgttctaccgccagcaccagatg
attccggttattctggaccacctgctggagctgttcccggaaatcacgtcgatgaactac
gtgctcaacgacaagggcaacgactcgctcgacggcctggaagtggtgtgctacaagggt
ctgccctacatccacgaggagatggagggtctgcgcttccgcgtggggccgaaatcgttc
taccaaaccaactcggagcaagcgtacgagctgtacaaaattgcccgcgactttgccggc
ctcaccggcacggagctggtgtacgacctctacaccggcgccggcaccattgccaacttc
gtggccaagcaggcccgcaaggtaatcggcgtggagtacgtggcgcaggccattgaagac
gcgaagctgaactcggaaatcaacggcgtgcagaacaccaagttctacgccggcgacatg
aaggacgtgctcaccaaggaatttaccgacgagcacggtcgccccgacgtcatcatcacc
gacccgccccgcgccggcatgcacgcagatgtggtaaaccgcctcatcgagctgcgcgcc
ccgcgcgtagtgtacgtgagctgcaaccccgctacccaagcccgcgacctagagttgctg
gccgacacctaccgcgtaacgcgcgtgcagccggtagatatgttcccgcacacccaccac
gtggagaatgtggtgctgctggagctgaagtag
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