Hymenobacter latericus: OIS50_02975
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Entry
OIS50_02975 CDS
T11505
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hyq Hymenobacter latericus
Brite
KEGG Orthology (KO) [BR:
hyq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hyq03016
]
OIS50_02975
Enzymes [BR:
hyq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OIS50_02975
Transfer RNA biogenesis [BR:
hyq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OIS50_02975
Prokaryotic type
tRNA splicing ligases
OIS50_02975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UYZ59766
LinkDB
All DBs
Position
1:721262..722698
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AA seq
478 aa
AA seq
DB search
MAKNTNKLHSKDLRQLGFTDDKQISLALDILDQRELRKLDKGSALALLREIKADPYKYVR
DQTWRPLAQELVPQPSRDVKLNPEIKDYRRYGEAFIEDGARKQMDTAMQLPVSIDGALMP
DAHQGYGLPIGGVLAVDNAVIPYGVGMDIGCRMALSVFELPPRYLEQRRDELKKLLHNHT
RFGNKEVFKNPADDPVLERPEFKEIGVVRGKHEAAVKQLGSSGSGNHFVEWGIVDITEEE
NDLNLPLGQYLGLLSHSGSRGLGAAIAQHYTKVAMNKCQLPPEARYLAWLDLDSQEGQEY
WRAMNLAGDYASACHHDIHRRLSKALGYNPLAQVENHHNFAWKETLADGREAIVHRKGAT
PAGQGVLGIIPGSMTAPGFIVRGRGERDSIQSASHGAGRRLSRTQAKQQVTEGELRRLLR
DQGVELIGGGLDEAPMAYKDIHQVMAHQRDLVDVLGSFTPRIVRMDAGGSGKSKYGGE
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaacaccaataaacttcacagcaaggacctacgccagctcggcttcaccgac
gacaagcagatcagccttgccctcgacatactcgaccaacgcgagctgcgcaagctcgat
aaaggcagcgccctggcgctgctgcgcgaaattaaagccgacccctacaagtacgtgcgc
gaccaaacctggcgccccttagcccaggagctggtgccgcaacccagccgcgacgtaaag
ctgaaccccgaaataaaagactaccgccgctacggcgaggcctttatcgaagacggggcc
cgcaagcagatggacaccgctatgcaactgcccgtttcgattgacggcgcccttatgccc
gacgcccaccaaggctacggtctgcccattggcggcgtgctggccgtagataatgccgtg
ataccctacggcgtgggcatggacatcggctgccgcatggccttgtcggtgttcgagctg
ccgccgcgctacctcgagcagcgccgcgacgagctgaaaaagctgctgcacaaccacacc
cgcttcggcaacaaagaagtattcaagaaccccgccgacgaccccgtgctggagcggccc
gagttcaaggaaatcggggtggtgcgcggcaagcacgaagccgccgtaaagcagctcggc
tcatcgggctcgggcaaccacttcgtggaatggggcattgttgatatcaccgaggaagaa
aacgacctcaacctgcccctgggccagtacctggggctgctctcgcacagcggctcgcgg
ggcctgggcgctgccattgcccagcactacaccaaagtagccatgaacaagtgccagctg
ccgcccgaagcccgctaccttgcctggctcgacctcgactcgcaggaagggcaggagtac
tggcgcgccatgaacctggccggcgactacgcctcggcctgccaccacgacattcaccgg
cgccttagcaaagccctgggttacaatccgctggcgcaggtagagaaccaccacaatttt
gcctggaaggaaaccctggccgacggccgcgaagccattgtgcaccgcaagggcgccacg
ccggccggccagggtgtgctgggcattatccccggctccatgacggcccccggctttatc
gtgcgcggccgcggcgagcgggattccatccagtcggcctcgcacggggcggggcggcgg
ctttcgcgcacgcaggccaagcagcaggtaaccgaaggcgagctgcgccgcctgttgcgc
gaccagggcgtggagctaatcggcggcggcctcgacgaggccccgatggcttataaggac
atccaccaggtaatggcgcaccaacgcgacctggtcgacgtgctcggctcctttacgccg
cgcattgtgcgcatggacgccggcggctcgggcaaaagcaagtacggcggcgagtag
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