Hymenobacter latericus: OIS50_03735
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Entry
OIS50_03735 CDS
T11505
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hyq Hymenobacter latericus
Pathway
hyq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OIS50_03735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyq03019
]
OIS50_03735
03009 Ribosome biogenesis [BR:
hyq03009
]
OIS50_03735
Enzymes [BR:
hyq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OIS50_03735
Messenger RNA biogenesis [BR:
hyq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OIS50_03735
Ribosome biogenesis [BR:
hyq03009
]
Prokaryotic type
rRNA helicases
OIS50_03735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UYZ59913
LinkDB
All DBs
Position
1:889123..891021
Genome browser
AA seq
632 aa
AA seq
DB search
MEKVKFEELQLSEELQRAITEMGFEEASPIQTAAIPVLLEGKDVIGQAQTGTGKTAAFSI
PAIEALDLNSREVQALVLCPTRELAVQVSGEIQKLGKYKRGLSVVPIYGGSSYDRQFKAL
ERGVQIVIGTPGRVMDHLERGTLKLDNCKMIILDEADEMLDMGFRDDIETVLSQMPEQRQ
TVFFSATMSKPIMDLTRKYQREPQIVKVNHQEMTVSNIEQAYYEVRGPQKKDVLSRVIDM
YSLKSVIVFANTKRMVDDIVSDLQARGYFADGLHGDMSQQARQNTLDKFRKGTLEILVAT
DVAARGIDVDNVEAVVNYDLPTDEEYYVHRIGRTGRAGKSGKAFTFVSGRDIYKLRDIMR
FTKAQIKQERIPSFEDVSEVKTTVLLGQIKEVIEKGNLEKYIGRVQRLIDQEEEVTSLDI
AAALLKMVMKESKQAEKGLEADRQKGTPREGYTRLFVTMGKKDRLHPRDLVDLIVSSSNI
APGRVGDIELYDKFSFVEVPTEDANDVIEQLGRTSLYGRPVSFSLATQREAGAAAAEGGD
ERRPRRSGGVGGFGGNREGGYQRREGGFGGGNREGGYGGNRGGYGGGQRREGGYGGGQRR
EGGFGGGGGYRGRRDNEGGYRPRRDRSEGFDD
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagtaaaatttgaagagctacagctctcggaagagctgcagcgtgctattacc
gaaatgggctttgaggaagcctcgcccattcaaaccgccgccattccggtactgctcgaa
ggcaaagacgttattggccaggcccaaacaggcaccggcaagacggctgcgttcagcatt
ccggcaatcgaagcgctcgacctgaactcgcgcgaagtacaggcgttggtgctctgcccc
acgcgcgaactggccgtgcaggtttcgggcgaaatccagaagctgggcaaatacaagcgc
ggcctctccgtagtgccgatttacggcggctcgtcgtacgaccgtcagtttaaggccctg
gagcgtggcgtgcagatcgtaatcggtacccccggccgcgtgatggaccacctggagcgt
ggcaccctgaagctggacaactgcaaaatgatcatcctcgatgaggccgacgaaatgctc
gacatgggcttccgcgacgacatcgagacggtgctgagccagatgcccgagcaacgccag
acggtgttcttctcggccacgatgagcaagcccatcatggatctgacgcgcaagtaccag
cgcgagccccagatcgtgaaggtgaaccaccaggagatgactgtttcgaacatcgagcag
gcatactacgaggtgcgtggtccgcagaaaaaggacgtactgtcgcgcgtaatcgacatg
tacagcctgaagtcggtgattgtgtttgctaacaccaagcgcatggtcgacgacatcgtg
agcgacctgcaggcccgcggctactttgccgatggtttgcacggcgacatgagccagcag
gcccgccagaacaccctcgacaaattccgcaaaggcacgctcgaaatcctggtggctacc
gacgtagctgcccgcggcatcgacgtggacaacgtagaggcggtagtaaactacgacctg
cccaccgacgaggaatactacgtgcaccgcatcggccgtacgggccgcgctggtaaatcg
ggcaaagctttcaccttcgtgagcggccgcgacatttacaagctccgcgacatcatgcgc
ttcaccaaagcgcagatcaagcaggagcgcatcccgtcgttcgaggacgtatcggaggtg
aaaaccaccgttctcctaggtcagatcaaggaagttatcgaaaagggcaacctcgagaaa
tacatcggccgcgtgcagcgcctgatcgatcaggaggaagaagtaacgtcgctcgacatt
gccgctgccttgctgaagatggtgatgaaggaaagcaagcaggccgaaaaaggcctggag
gccgaccgccagaagggcacgccgcgcgagggttacacccgcctgttcgtgacgatgggc
aagaaggaccgcttgcatccgcgcgacctcgttgacctgatcgtatcctcgtcgaacatt
gccccgggccgcgtgggcgacatcgagctgtacgacaagttcagcttcgtggaagtaccc
accgaagacgccaacgacgtaattgagcaactgggccgcacctcgctgtacgggcgtccg
gtatcgtttagcctggctacccagcgcgaagccggtgccgcagcagccgaaggcggcgac
gagcgtcgtccgcgtcgttcgggtggcgtaggtggctttggcggcaaccgcgaaggcggc
taccagcgccgcgaaggcggttttgggggcggcaaccgcgaaggcggctacggcggtaac
cgtggtggttacggcggtggtcagcgtcgcgagggcggctacggcggcggccagcgccgc
gagggtggtttcggcgggggcggtggctaccgcggccgccgcgacaacgagggcggctac
cgcccgcgtcgcgaccgtagcgaaggcttcgacgactag
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