Hymenobacter latericus: OIS50_03875
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Entry
OIS50_03875 CDS
T11505
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyq Hymenobacter latericus
Pathway
hyq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OIS50_03875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyq03019
]
OIS50_03875
Enzymes [BR:
hyq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OIS50_03875
Messenger RNA biogenesis [BR:
hyq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OIS50_03875
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UYZ59940
LinkDB
All DBs
Position
1:complement(921835..923253)
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AA seq
472 aa
AA seq
DB search
MTFNDLQLLPELLTALHATGYERPTPIQQQAIPYVLDARDLLGVAQTGTGKTAAFTLPLL
QRLHLSKPTNQPSGPRAVRALILTPTRELAIQIGESFATYGQNLKLRHAVIFGGVSQHPQ
VEALRRGVDVLIATPGRLLDLINQGYIDLKRLEIFVLDEADRMLDMGFINDIRRILPLLP
KQRQSLFFSATMPPTIQQLADSILRNPVQVAVTPVSSTAEKVEQAVYMIEKTDKPYLLLE
VLSNPELRRVLVFTRTKHGADRVAKGLNAKGIVAEAIHGNKSQNARQRALQNFKSGETRV
LVATDLAARGIDVDELSHVVNYELPNEPETYVHRIGRTGRAGAEGMALSFCDQEERAYLQ
DIQRLINREIPLVDNHSYANNDVAPVPLKGPTITKPKGPAGRPPRPGRGPATTGGGAKAN
RGAAAGHARPATAPRQKQDNRSKASSPSQGAAAAGPGKPRPNGRSGRRRRRD
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttgacgtttaacgacctccaactgctgccagaactgctgacagctttgcacgctacgggc
tacgagcgccccactcccattcagcagcaagccattccgtatgtgctcgacgcccgcgat
ttgctgggcgtggcccaaaccggcaccggcaaaacggcggcctttaccttgccgctgctg
cagcgccttcatctttcgaagcccaccaatcagcccagtggcccgcgtgccgttcgggcg
ctgattctgacgcccacccgcgagctggccattcagatcggggaaagctttgctacttac
gggcaaaacctgaagctgcgccatgcggtaattttcggcggcgtaagccagcacccgcaa
gttgaggccctccgccgcggcgttgatgtgctgattgccacccccggccgcctgctcgac
ctgatcaaccaaggctacattgatctgaagcgcctggaaattttcgtgctggatgaagcc
gaccgcatgctcgacatgggtttcatcaacgacatccggcgcatactgccgctgctgccc
aagcaacgccagtcgctgtttttctcggccaccatgccgcccaccattcagcagctggct
gatagcattttgcgcaatcccgtgcaggtggcggttacgcccgtttccagcaccgccgaa
aaggtggagcaggcggtgtacatgatcgagaagaccgacaagccttacctgctgctggag
gtgctgagcaaccctgagctgcgccgcgtgctggtgtttacccgtaccaaacacggcgcc
gatcgggtagcgaagggcctgaatgccaaaggcatcgtggcggaggccattcacggcaac
aaatcgcagaatgcgcgccagcgggctttgcaaaacttcaagagcggcgaaacgcgggtg
ttggtggctaccgacctggcagcccggggtattgatgtagacgagctgagccacgtagta
aactacgagctacccaacgagcccgaaacctacgtgcaccgcattggccgcaccggccgg
gccggtgccgagggcatggcgctgtccttctgcgaccaggaggagcgggcttacctgcag
gatattcagcggctgattaaccgcgaaattccgttggtcgacaaccactcgtacgccaac
aacgacgtagccccggtgccgctcaaaggccccaccattaccaagcccaaaggcccggct
ggccggccgccgcgccccggccgggggcccgccaccaccggaggcggcgctaaggccaac
cgcggagccgctgcgggccatgcccggccagccacggctccgcgccagaagcaagacaac
cgcagcaaggcttcgtcgccaagccagggggctgctgcagctggccctggcaagccgcgc
cccaacggccgttccggtcgtcggcgccgccgcgactag
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