Hymenobacter latericus: OIS50_19025
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Entry
OIS50_19025 CDS
T11505
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hyq Hymenobacter latericus
Pathway
hyq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OIS50_19025 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyq03021
]
OIS50_19025 (rho)
03019 Messenger RNA biogenesis [BR:
hyq03019
]
OIS50_19025 (rho)
Transcription machinery [BR:
hyq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OIS50_19025 (rho)
Messenger RNA biogenesis [BR:
hyq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OIS50_19025 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_25
NACHT
ATPase_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UYZ59133
LinkDB
All DBs
Position
1:4285945..4288077
Genome browser
AA seq
710 aa
AA seq
DB search
MYTIDELKDRLLSELKEIAESLNVGNFRRLSKQDLIYKILDQQAITPPDKMPTKRAPLAE
TVEAAPAANGAVAPAVAAPAGRPERRGGRNAAPAPAPVVAEAPVAEAAGAEAPVAEAPAV
EVSVGNGRAARGNQRGGRGRRNDQPVAAAAPDEEGNAPAAPLPPVEAPAINEPVITQPIP
EIQQPAEAPAPRPAEEQPREQRPVRFVVPQPGREPREIRPADYRRDAPRPNRNDPREPRP
APQGTPEQAPQAPRPLGEQPRPLNGQAQPPRDERDVREPREPREMRDGREGREPRDRDQR
REDRFNREGREGRQPQQGQRPAGEQPQQRQPQLPRVESLDITIPSEGALEMMPDGGYGFL
RSPYYNYLASPDDIYVSPQQVKQYSLKAGDTVKCTVRPPKEGEKYYALVTVESVNGRSVE
DVRDRISFSHLTPLFAEERLKLSTSPSQYSTRILDLFAPIGKGQRGLIVAQPKVGKTVLL
QEIANSIAENHPEVYLMILLIDERPEEVTEMQRTVKAEVLSSTFDETADRHVKIAGMALD
KAKRLVECGHDVVILLDSITRLARAYNTVQPSSSRILSGGIDAGALQKPKRFFGAARNVE
NGGSLTIIATALTDTGSKMDEVIFEEFKGTGNMELQLDRKLANKRIFPAIDVPASGTRRE
DLLMGKEELSRVWVLRKFMSDMTSTEAMEFLKDRMKGTRDNMEFLVSMNG
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtacactattgacgagctcaaggaccggttgttgtccgagctgaaggaaatagccgaa
tcccttaacgtgggcaatttccgccgcctgagcaagcaggaccttatctacaagattctg
gatcagcaagctataacgccgcccgataaaatgcccactaaacgggctccgttggccgaa
accgttgaggccgctccagccgcgaatggcgctgttgcgcctgccgtagccgcccctgcg
ggccgccccgagcgccgtggtggccgcaacgccgctccggcccctgccccggtggtggcc
gaagcgcccgtagccgaggctgccggggccgaagcacccgttgctgaggccccggctgtt
gaggtatcggtgggcaacggccgcgccgcacgcggcaaccagcgcggtggccgcggccgc
cgcaacgaccagccggtagctgctgccgcccccgacgaagagggcaacgctccggccgct
ccgctgccgccggtagaggcgccggccattaacgagccggtaatcacccagccgattccc
gaaattcagcagcctgccgaggcgcccgccccgcgccccgccgaggagcagccccgcgag
cagcgccccgtgcgctttgtggtgccgcaacccggccgcgagccgcgcgaaattcgcccg
gccgattaccgccgcgatgcgccgcgccccaaccgcaacgacccccgcgagccgcgcccc
gcaccgcagggcacgcccgagcaggcaccgcaagcaccgcgccccctaggtgagcagccg
cgtccgctcaacgggcaggcccagccgccgcgcgacgaacgcgacgtgcgcgaaccgcgg
gagccccgcgaaatgcgtgatggccgcgaggggcgcgaaccgcgcgaccgtgaccagcgc
cgcgaagaccgctttaaccgcgaaggccgcgaaggccgccaaccgcagcaaggccagcgc
cctgctggcgagcagccccagcagcgccagccgcagctgccccgcgtcgaatcgttggat
attaccattccgagcgaaggtgctctggagatgatgcccgacggtggctatggcttcctt
cgttcgccgtactacaattacctggcctcgcccgacgacatttacgtgtcgccgcagcag
gtgaagcagtactcgctgaaagcaggcgacactgtgaagtgcaccgtgcgcccgcccaaa
gaaggcgaaaagtactatgcactggtaacggtggaaagcgtaaacggccgctcggtggaa
gacgtgcgcgaccggatttccttctcgcaccttacgccgctgtttgccgaggaacgcctc
aagctgagcacttcgccttcgcagtacagcacccgtattttggatttgtttgcccccatc
ggcaaaggccaacgcggcctgattgtggcgcagcccaaagtgggtaaaaccgtactgctg
caggaaattgccaactctattgccgagaaccaccccgaggtgtacctgatgattttgctc
atcgacgaacgccccgaggaagtaaccgagatgcagcgcacggtgaaagccgaagtgctc
agctcgaccttcgacgaaacagccgaccgccacgtgaaaatcgccggcatggctctcgac
aaggccaagcgcctcgtcgagtgcggccacgatgtcgtaatcctgctcgactcgattacg
cgcctggcccgcgcctacaacacggtgcagccttcgtcgagccgcatcctgtcgggtggt
atcgatgctggcgctctgcagaagcccaagcgcttctttggtgctgctcgcaacgtggaa
aacggcggttcgctcaccatcattgccacggccctgacggacaccggctcgaagatggat
gaagtaatcttcgaagagttcaagggtaccggcaacatggagctccagctcgaccgcaag
ctggccaacaagcgcatcttcccggccatagacgtgccggcttcgggcacccgccgcgaa
gacctgctgatgggcaaggaagagctcagccgcgtgtgggttctgcgcaagttcatgtcc
gacatgacctcgaccgaggccatggagttcctgaaggaccgcatgaaaggcacccgcgac
aacatggagttcttggtgtcgatgaacggctaa
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