Hydrogenophaga sp. RAC07: BSY239_1206
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Entry
BSY239_1206 CDS
T04455
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hyr
Hydrogenophaga sp. RAC07
Pathway
hyr03030
DNA replication
hyr03430
Mismatch repair
hyr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BSY239_1206 (dnaE)
03430 Mismatch repair
BSY239_1206 (dnaE)
03440 Homologous recombination
BSY239_1206 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyr03032
]
BSY239_1206 (dnaE)
03400 DNA repair and recombination proteins [BR:
hyr03400
]
BSY239_1206 (dnaE)
Enzymes [BR:
hyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BSY239_1206 (dnaE)
DNA replication proteins [BR:
hyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BSY239_1206 (dnaE)
DNA repair and recombination proteins [BR:
hyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BSY239_1206 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AOF84850
UniProt:
A0A1B3LVI5
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All DBs
Position
1276656..1280213
Genome browser
AA seq
1185 aa
AA seq
DB search
MFLHLRLHTEFSVVDGTNRIDEVVAAAAADRQPALAITDLSNLFGAVKFYKAARGVGVKP
IIGAEVMLQGFTEETPGAMPGSHQPAAPRVLLLVQDHQGYLNLSELLARAWTRNEGRGQA
LVHRDWLQECNAGLIMLSGAQAGPVGQALMQGDTQRATDMALQLSTMFTHRFYIELQRAG
RADDERHVTQAVQLAARLHLPVVATHPVQFLEPDGYEAHEARVCISEGEILGNNRRVRRF
TREQYFKSAEQMQALFADVPSALANTLEIAKRCNLTLVLGKPQLPNFPTPLIDGVPMPMA
DFFRQSSFEGLEERLAHLYPDPAKRDAERPRYVERLEFEINTILNMGFPGYFLIVGDFIN
WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYKLLFERFLNPERVSMPDFDIDFCQT
NRDRVIDYVKDKYGKDAVSQIATFGTLAARAAIRDVGRVLDFSYGFCDGISKLIPNKPGM
SVTLQYPPNPKKEGDKNNYAIEMEPVLAERIAKEDDVKTLIELAQKLEGMTRNIGMHAGG
VLIAPGKLTDFCPLYAQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARELIMK
RHPGQEGFRFEDIPLTDAKVYALFSRGQTEAVFQFESRGMQGMLKDAKPSRLEDLIALNA
LYRPGPMDLIPSFVNRKHGKEVIEYPHPLVAEMLSETYGIMVYQEQVMQTAQILGGYSLG
GADMLRRAMGKKKAEEMAEHREIFRAGAAKNDISQQKADEIFDLMEKFAGYGFNKSHAAA
YSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLHEDALKMGMSFEAPDVNRGFHRF
EPVTNKVIRYGLGAIKGTGQGAIEAIVAAREGRGEGPRGHETGPFKSLFDFCVRVDRTRL
NKRTVEALIKAGGFDSLHLNRAELLASVDRAFTFAAASAANAAQADIFGDSDHGSSTQDP
DLVATTPWGVKERLTMEKTAIGFYFSGHLFDEVEREVRRFARTPLGDVVESRDPVILAGI
VTDFRVINGQRGKLALFKLDDKTGVFETSADENLINAHRNLLKDDELIIVQAVAQPDRFS
GGVRLKIQQVWDLAAARCRFGKYLRVAVNGHAPAVAQLVREFPPKREVTEQGELVRGLPV
RLQLLREGAQCELQLDDRALFFPTDAALASWMAQAHERRAEIVFD
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgtttctacacctgcgcctgcacaccgaattctccgtcgtcgacggcaccaaccgcatc
gatgaagtcgtggccgccgcggccgccgaccgccaacccgccctggccatcaccgacctg
agcaacctgttcggtgcggtcaagttctacaaggccgcgcgcggtgtgggcgtcaagccc
atcatcggcgccgaggtgatgttgcagggcttcaccgaagaaacgcccggcgccatgccc
ggcagccaccagcccgccgcgcctcgggttctgctgttggtgcaggaccaccagggttac
ctgaacctgagcgagctgctggcccgcgcctggacgcgcaacgaaggtcggggccaggcg
ctggtgcaccgcgactggctgcaggaatgcaatgccggtttgatcatgctctcgggtgcg
caggccggcccggtggggcaagcgctgatgcagggcgacacgcaacgcgcgaccgacatg
gcgctgcaactctccaccatgttcacccaccgcttctacatcgagctgcagcgcgccggg
cgtgccgacgacgagcgccacgtgacgcaagccgtgcaactggcggcgcgtttgcacctg
ccggtggtggccacgcacccggtgcagtttctggagcccgacggctacgaggcgcacgaa
gcgcgcgtgtgtatttccgaaggagagatcctcggcaacaaccggcgtgtgcgccgcttc
acccgcgagcagtacttcaagagcgccgagcagatgcaggcgctgtttgcggacgtgcct
tctgccttggccaacacgctggagattgccaagcgctgcaacctcacgctggtgctgggc
aagccgcagttgcccaacttccccacgccgctgatcgatggcgtgcccatgccgatggcg
gacttctttcgccagtcgtcgtttgaggggctcgaagagcgcctggcccacctgtacccc
gacccggccaagcgcgacgccgagcgtccgcgttacgtggagcgtctggagttcgagatc
aacacgattttgaacatggggttcccgggctactttctgatcgtgggcgacttcatcaac
tgggccaagaacaacggctgcccggtcggcccgggccggggctcgggcgccggctcgctg
gtggcctacgcgctcaagatcaccgacctggacccgctgcaatacaagctgctgttcgag
cgcttcttgaacccggagcgggtgtccatgcccgacttcgacatcgacttctgccagacc
aaccgcgaccgcgtgatcgactacgtcaaggacaagtacggcaaggacgcggtgagccag
atcgccaccttcggcacgctggccgcgcgcgcggccatccgcgacgtgggtcgtgtgctc
gatttctcctatggtttttgcgatggcatttccaagctgattccgaacaagccgggcatg
tcggtcacgctgcagtacccgcccaacccgaaaaaagaaggcgacaagaacaactacgcg
atcgagatggagccggtgctggccgagcgcatcgcgaaggaagacgatgtcaagacgctg
atcgagctggcgcagaagctcgaaggcatgacgcgcaacatcggcatgcacgccgggggt
gtgctgatcgcgccgggcaagctcaccgacttctgcccgctgtacgcacagcccggcagc
gactcggcggtgagccagtacgacaaggacgacgtggaggccatcggtctcgtgaagttc
gactttctgggtctggcgacgctgaccatcctggagattgcgcgcgagctgatcatgaag
cgccacccgggccaggagggcttccgttttgaagacatcccgctgaccgacgccaaggtc
tacgcgctgttctcgcgcggccagaccgaggccgtgttccagtttgaaagccgcggcatg
cagggcatgctcaaagacgccaagccgagccggctggaagacctgatcgcgctcaacgcg
ctgtaccggccaggccccatggacctgatccccagcttcgtgaaccgcaagcacggcaag
gaagtgatcgagtacccgcacccgctggtggccgagatgctgtccgagacctacgggatc
atggtctaccaggagcaggtgatgcagaccgcgcagatcctgggcgggtactcgctgggc
ggcgccgacatgctgcgccgggccatgggcaagaagaaggccgaggagatggcggagcac
cgcgagatcttccgcgccggtgccgcgaagaacgacatctctcagcagaaggccgacgag
atcttcgacctgatggagaagtttgcgggctacggtttcaacaagtcgcacgccgccgcc
tactcgctgctggcctaccacaccggttggctcaaggtgcactacacggccgagttcttc
tgcgccaacatgaccgtggagatggacgacaccgacaagctcaaggtgttgcacgaagac
gcgctcaagatgggcatgagcttcgaggcgcccgatgtgaaccgcggtttccaccgtttc
gagcccgtgaccaacaaggtcatccgctatggtctgggggccatcaaaggcacgggccag
ggagcgattgaagccatcgtggccgcgcgcgaaggccgcggcgaaggccctcggggccac
gagacaggaccgttcaagagcttgttcgatttctgcgtgcgggtggaccgcacgcgcctg
aacaagcgcacggtggaagcgctgatcaaggccggtggttttgattcactgcacctcaac
cgagcggagctgctggcctcggtggaccgtgcgttcaccttcgccgccgcgtcggctgcg
aacgccgctcaggccgacatcttcggcgacagcgaccacggctccagcacgcaggacccc
gatctggtggctaccacgccctggggcgtgaaagagcgcctgaccatggagaagaccgcg
atcggcttctatttctcgggccatttgtttgacgaggtcgagcgcgaggtgcgccgcttc
gcgcgcacgccgctgggcgatgtggtggagagccgcgacccggtgatcctggccggcatc
gtgaccgacttccgcgtgatcaacggccagcgaggcaaactcgcgctgttcaagctcgac
gacaagaccggcgtgttcgaaaccagcgccgacgaaaacctgatcaacgcgcaccgcaac
ctgctgaaggacgacgagctcatcatcgtgcaggccgtggcccagcccgaccgcttctcg
ggcggcgtgcgcctgaagatccagcaggtgtgggacctggccgcggcgcgctgccgcttc
ggcaagtacctgcgcgtggcggtgaacggccacgcacccgccgtggcccaactggtgcgc
gagttcccgcccaagcgggaagtgacggagcagggggagttggttcggggcctgccggtg
cgcctgcagctcttgcgcgagggcgcgcagtgcgaattgcagctggacgaccgggcgctg
tttttcccgaccgatgcggcgctggccagctggatggcccaggcgcatgagcggcgggcg
gaaatcgtgttcgattag
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